Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21m08
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 226 3e-60
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 30 0.34
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.2
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.2
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 26 5.5
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.7
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 25 9.7
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 9.7
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.7
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 25 9.7
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 226 bits (552), Expect = 3e-60
Identities = 107/194 (55%), Positives = 141/194 (72%)
Frame = +1
Query: 79 MKGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPS 258
M FN ++GY+E L RG++ +L+Q Y NL QCE+LED +L L TDYG FLAN+ S
Sbjct: 1 MDALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQ-S 59
Query: 259 PLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPIS 438
L+ S I K EKL+ EF +R + E LS F+D+ITY+YMIDNI+LL+TGT++ +
Sbjct: 60 KLTSSIISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTH 119
Query: 439 ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRN 618
+L+ +CHPLG FE + A+ VA ELY+ VL++TPLAP+F DC+S DLDE +IEIIRN
Sbjct: 120 DLLERCHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRN 179
Query: 619 TLYKAYLEAFYDFC 660
TLYKAYLE FY+FC
Sbjct: 180 TLYKAYLEDFYNFC 193
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 29.9 bits (64), Expect = 0.34
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 621 SVPDNLNIHFIQVLFANAIHKEWRQWCVHQHSIVKF 514
SV D LN +F LF + +K W W + +V +
Sbjct: 1628 SVRDILNCYFYATLFDKSWYKAWHSWALANFEVVGY 1663
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.2
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Frame = +1
Query: 229 YGTFLANEPSPLSVSTIDDKLREKLVIE-FQHLRNHSVEPL---STFLDFITYSYMIDNI 396
+G L + SP++ S DD++ LV + F+ SV L ++T Y +I
Sbjct: 1581 FGRLLPSLDSPVTKSITDDRVEPLLVKDTFREFAEASVSGLLSCDESFHYLTQLYYTADI 1640
Query: 397 ILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAA---TPAELYNAVLVD-TPLAPFFV 564
+ + L QR + L+ KC FE + + +++ ++ VD L F
Sbjct: 1641 VRNLWILLSQR--NSLL-KCMESVEFEAFDYEQLKGFEHLVIQIWKSLRVDGAGLINF-- 1695
Query: 565 DCISEQDLDEMNIEIIRNTLYKAYLEAF 648
DC +E DL+ ++ TLYK LE F
Sbjct: 1696 DCCTEDDLNNPHLLF---TLYK-LLERF 1719
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 490 IHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFC 660
I+ + + L N L T PF S Q+ ++ +++RN L+K +F+ C
Sbjct: 178 INPTTSKSPLLNKKLSSTSQEPFRTSRRSGQESGDVTTKMLRNLLHKRLWISFFFAC 234
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.2
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Frame = +1
Query: 301 LVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILL--ITGTLHQRPISELIPKCHPLGSF 474
L +E LR VE ++ + I N L ++ Q P S+L+ PL SF
Sbjct: 835 LYVESLQLRKLWVEKINVAKKRHSQKINIKNPFALKVVSDVAFQYPPSDLVNGNEPLNSF 894
Query: 475 EQM---------EAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLY 627
++ A++ A + + L+ P+A + CI++ + E ++ ++ T
Sbjct: 895 NEITLVEGSSIDRALNEVAWKHPIVSEELLPEPIAYGDISCIAQFNDYEGHVSVLIATST 954
Query: 628 KAYLEAFYD 654
+L AF D
Sbjct: 955 GIFLGAFGD 963
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 229 YGTFLANEPSPLSVSTIDDKLREKLVIE 312
Y T++AN+ S +T+D LR L ++
Sbjct: 374 YSTWIANKHKTASSATVDSPLRRSLSVD 401
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 161 DCFRIPHLKPRHKPSKYPASILNM 90
D F +PH P++ YP ++L++
Sbjct: 593 DKFYVPHSPPKYTMETYPNNVLSL 616
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 402 VDYWYIAPETYLGVNSKVPSI 464
V WY APE LG + P+I
Sbjct: 180 VTIWYRAPELLLGAHDYTPAI 200
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 355 FLDFITYSYMIDNIILLITGTLH 423
FLDF+T I N+++L+T H
Sbjct: 140 FLDFLTLRPYISNLLVLLTKHYH 162
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 205 LDLQVSHTAPSSSSQIVSEY 146
+DL++S+T P S ++I+ Y
Sbjct: 727 IDLEISNTGPMSGAEIIQVY 746
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 169 LNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPL 348
LN V ++ K+H G++YG++L N L+ K L+I + +P
Sbjct: 198 LNYVMSNSVST-KIHFVGSEYGSYLLNSYLDLNWKKFSGKAGAILLIMNMSINEELHDP- 255
Query: 349 STFLDFITY 375
D+++Y
Sbjct: 256 ----DYVSY 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,036
Number of Sequences: 5004
Number of extensions: 61979
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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