Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21m04
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 41 2e-04
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 34 0.018
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.16
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 31 0.16
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.38
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 30 0.38
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 1.5
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 2.0
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 2.7
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.5
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 27 3.5
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 4.7
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 26 4.7
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.1
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 25 8.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 8.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 8.1
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +3
Query: 429 LGAFFTGYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTPWL-VEWGGWKAVCGCRF 605
L F+ GY I VPS ++ +I L G+ L + G ++ RF
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192
Query: 606 LQGISQSGTYPSIQSLLSKWVPANELGAFPSYIYT 710
G+++SG +P + +S+W LG + YT
Sbjct: 193 FLGVAESGLWPGLAYYMSRWYRGKHLGKRIGWYYT 227
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 34.3 bits (75), Expect = 0.018
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 438 FFTGYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTPWLVEWGGWKAVCGCRFLQGI 617
F+ GY + P+ IL Q+C ++S+ F + S + + ++ G RFL GI
Sbjct: 121 FYAGYLVAQYPAAILMQKC--RLSY-FIFCNVFLWSAMVCLMAACRNGPSLLGLRFLAGI 177
Query: 618 SQSGTYPSIQSLLSKWVPANE 680
++ P+ ++ + W E
Sbjct: 178 FEASITPAFINITAMWYRREE 198
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 414 YSYPNHKPEIHVSKY 370
YSYPNHK EIHV K+
Sbjct: 124 YSYPNHKLEIHVYKH 138
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 447 GYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTPWLVE 569
G+C G+V + + C G +S SL I IT + W ++
Sbjct: 302 GFCSGVVAGLVAATPCAGFVSPHASLAIGAITGLCCNWAIK 342
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -2
Query: 589 TAFQPPHSTNHGVTILVMPLISSENWNEILPPHRWLRIPLGTIPMQ*PVKNAPSTISCI 413
T+ PP ST+H T +P +S N +PP L T P P + ST + +
Sbjct: 67 TSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP---PTTHVNSTTTVV 122
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.38
Identities = 27/101 (26%), Positives = 45/101 (44%)
Frame = +3
Query: 378 KHEFQVYDWDMSIQEMVLGAFFTGYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTP 557
K E Q+Y W + AF+ GY + P+ +L QR + L+I G +T
Sbjct: 96 KMEGQMYSWSGT-------AFYLGYLVFEFPASLLLQRFPLSKTLCVFLVIWGFLLCMTS 148
Query: 558 WLVEWGGWKAVCGCRFLQGISQSGTYPSIQSLLSKWVPANE 680
+ + G+ A+ R L G+ +S P L ++W +E
Sbjct: 149 -VANYPGFIAL---RVLLGMMESAASPGFILLTAQWYKRSE 185
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 243 NVTNETLINVTEQIDTNSIFSEAEFIGISETDELNNNTEAENSTSKHE 386
NVT LI+VT+ ++ + E GISE E +NN E+ SKHE
Sbjct: 223 NVTKFELISVTKPLNND------ESSGISEPIETSNNN--ESPVSKHE 262
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 447 GYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTPWLVEWGGWKAVCGCRFLQGISQS 626
G +G G+++QR G + +F F + + +++I+ W V L I
Sbjct: 167 GGSLGGPLGGLIAQRWGWRTAFHFQVPMGILSTILVAWRVRVKPTVRNSNASLLSRIDYL 226
Query: 627 GTYPSIQSLLSKWVPANELG-AFP 695
G++ + + + V N G AFP
Sbjct: 227 GSFLLVTGITALVVTFNMGGDAFP 250
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 301 KILFVSICSVTFIKVSFVTFF*DIFVMATIVTPRW 197
K++F + SVT VS F + ATI P+W
Sbjct: 15 KVIFFVLRSVTLSLVSVTRFSLFLLSFATITVPKW 49
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = -2
Query: 328 LMPMNSASLKILFVSICSVTFIKVSFVTFF*DIFVMATIVTPRWLRAMNATVMHSKNITN 149
L P S + L V+ F++ +FV+F D+F+ T P + V +N
Sbjct: 190 LQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAI 249
Query: 148 CMCRTP 131
TP
Sbjct: 250 LEVATP 255
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 444 TGYCIGMVPSGILSQRCGGKISFQFSLLINGITS 545
TG+ GMVP G+LSQ G F +LL G+ +
Sbjct: 209 TGF-FGMVPGGLLSQIGRGYTDFCAALLAVGLNA 241
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 74 SNKRNIKQFGTYSPIALRMWSPTHTVRYIFTVHDRCVHSAQPSWSHDS 217
SN++ + + SP+ P+H++ Y +T + +++ S HD+
Sbjct: 118 SNRKPTEAYRRNSPVKKSFSRPSHSLLYPYTSSNNMTSTSRMSGIHDA 165
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/89 (22%), Positives = 36/89 (40%)
Frame = +3
Query: 393 VYDWDMSIQEMVLGAFFTGYCIGMVPSGILSQRCGGKISFQFSLLINGITSIVTPWLVEW 572
V+ +++ + + F GYC G + LS+ G K +L GI +I +
Sbjct: 165 VFHISLTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIFNIS---VAVG 221
Query: 573 GGWKAVCGCRFLQGISQSGTYPSIQSLLS 659
+ + CRF G S + + L+
Sbjct: 222 KDIQTIMMCRFFAGFFASAPLTVVAAALA 250
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 603 FLQGISQSGTYPSIQSLLSKW 665
FL+ +S+ G Y I SL+S W
Sbjct: 348 FLKPLSEKGNYKDILSLISVW 368
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +3
Query: 81 NEILNSLERTVPSHYGCGVRHIQFVIFLLCMTVAFIARSHLGVTIVAMTNISQKNVTNET 260
N L SL V C ++ + FIAR +V N+S+ + ++
Sbjct: 149 NPKLKSLPMAVGKSVLCTANYVARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKE 208
Query: 261 LINVTEQIDTN 293
+ NV Q D+N
Sbjct: 209 IQNVLAQYDSN 219
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 24 NTSNKKMSEKSSDYCKVPTNEILNSLERTVPSHYGCGVRHIQFVIFLLC 170
N+ N + +SS C VP L ++ TV S R F++ LC
Sbjct: 229 NSENCRRRYQSSAKCSVPGFNALGTIAETVLSKSLNSARMATFLLKFLC 277
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 522 LLINGITSIVTPWLVEWGGWKAVCGCRFLQGISQSGTYPSIQSLLSKWV 668
L ++ +T+ + WLV W V F + + S Q LL +W+
Sbjct: 127 LTVDNVTAFFSWWLVSHIVWIVVGTTTFFSLLLYTLNTVSAQELLGRWI 175
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 8.1
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 216 VAMTNISQKNVTNETLINVTEQIDTNSIFSEAEFI-GISETDELNNNTEAENSTSKHEFQ 392
+ +TN++ +N + + ++E ++T S+ A I G+ N + + S
Sbjct: 447 IGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGLGLAYSGANREDLLDMLSPI--- 503
Query: 393 VYDWDMSIQ-----EMVLGAFFTGYCIGMVPSGIL 482
V D D +Q + LG F G C G V S IL
Sbjct: 504 VTDTDCPMQLSCLAALSLGLIFVGTCNGDVASTIL 538
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,963
Number of Sequences: 5004
Number of extensions: 72106
Number of successful extensions: 228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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