Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m03
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    31   0.18 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    30   0.31 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    28   1.2  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.6  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   8.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.8  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/44 (25%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = -1

Query: 710  MTIIIQNFWLNPLHGQNLQ*VYNLDAI-QHQVWMTTLTY*LKIW 582
            +++ +QNFWL+ L+G++   ++++  I Q Q+++  + + + +W
Sbjct: 2203 ISVFLQNFWLSSLNGRSWSYLWDIGNIHQWQIFLLIVAFYIVLW 2246


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 444 RPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADSFISLISD 283
           RP+++ S   K+ + +L++ L+   E   +     +GFR GRSC  +  S+ ++
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSCHSALRSIFTN 359


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 436 NWSI*ASKFWCLVWFEYRNNTLCFPCLWNIVVK 534
           +W++  +K  CL  + Y NN LC     NI  K
Sbjct: 26  SWNVIVAKVNCLEVYSYENNRLCLITSANIFAK 58


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 348 DVQYGFRRGRSCADSFISLISDLDITPPSLLTGITLNKYTPPLS 217
           D+  GF     C +   S +    +TP + +T  + + Y P  S
Sbjct: 497 DISQGFMNPSLCVNLDFSSVMRKHLTPSAFITTASFSTYNPEFS 540


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 489 PILKPDKAPELASSYRPISLSS 424
           P+L+P   P++ S + P+SL S
Sbjct: 151 PVLRPPPVPQVPSHWYPVSLPS 172


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -1

Query: 674 LHGQ--NLQ*VYNLDAI--QHQVWMTTLTY*LKIWMNQLKN-YF*ISSIYFGLTTIFHRH 510
           LH Q  N+Q +Y   +    H   M TLTY ++ W N   N YF     Y G+   F ++
Sbjct: 330 LHAQKHNVQNIYFGGSFIRNHVQTMHTLTYAIQYWSNHTMNAYFLRHEGYLGVFGAFMKY 389


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 119 LSLVFLIFLPQFPPQSVN 172
           L++  L+  PQFPPQ++N
Sbjct: 342 LAMTKLLASPQFPPQNIN 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,097
Number of Sequences: 5004
Number of extensions: 68986
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)