Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m03
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1166 - 11025276-11025374,11025508-11026431                       37   0.015
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    34   0.11 
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    32   0.43 
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    29   3.0  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    28   9.2  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   9.2  

>07_01_1166 - 11025276-11025374,11025508-11026431
          Length = 340

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 218 DKGGVYLLRVIPVNNEGGVMSRSDIKEIKLSAQLRPRLKPYWTSGMI*LAS----TYQSR 385
           D GG+ L+ V+P    G ++S    K+   +  L PR +  W S  + L +    + Q R
Sbjct: 29  DAGGIDLISVLPDEILGSIISLLPTKDAARTTVLSPRWRHLWCSAPLNLDADGGLSGQER 88

Query: 386 RTFNIVSKILPRH 424
           +  +IVS+IL  H
Sbjct: 89  KRISIVSRILEAH 101


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 495  VIPILKPDKAPELASSYRPISLSSCLGKIFETMLKVRLD-WYVEANHIIPDVQYGFRRGR 319
            ++ I KP K       YRPISL +C  KI   +L  RL   ++   H+    Q GF +GR
Sbjct: 973  IVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHL---DQTGFLKGR 1028

Query: 318  SCADSFI 298
              +++ I
Sbjct: 1029 CISENLI 1035


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 465 PELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADS 304
           PE  S +RPISL + L KI   +L  RL  ++    I+ + Q  F  GR   DS
Sbjct: 181 PEHLSKFRPISLCNVLYKIASKVLANRLKLFLP--DIVSEFQSAFVPGRLITDS 232


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 483 LKPDKAP-ELASSYRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCAD 307
           L P K   E  + +RPISL     KI   +L  RL   +    ++ D  YGF +G++  D
Sbjct: 375 LVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVI--LKLVSDNHYGFIKGKTIQD 432


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 6   LWPNLNLFIVVMKTRLSLVFNFSYHGLT--GRLSWI 107
           LWP+L   ++++ T  S+V ++S+  L+  GR SW+
Sbjct: 566 LWPSLARSLILLNTAGSVVPSYSFIPLSEEGRTSWL 601


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 24/108 (22%), Positives = 44/108 (40%)
 Frame = -3

Query: 627  TPGMDDYPYLLIKNLDESAQKXXXXXXXXXXXXNYIPQAWKTQCVIPILKPDKAPELASS 448
            +PG D +P    +    + +               +P+      ++ I K D+  +L   
Sbjct: 908  SPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDL-KD 966

Query: 447  YRPISLSSCLGKIFETMLKVRLDWYVEANHIIPDVQYGFRRGRSCADS 304
            YRPISL + + K+    L  RL   ++   ++   Q  F +GR   D+
Sbjct: 967  YRPISLCNVVYKVVSKCLVNRLRPILD--DLVSKEQSAFIQGRMITDN 1012


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,075,317
Number of Sequences: 37544
Number of extensions: 382100
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)