Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21m02
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   138   1e-33

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  138 bits (333), Expect = 1e-33
 Identities = 82/243 (33%), Positives = 112/243 (46%), Gaps = 4/243 (1%)
 Frame = +1

Query: 19  HPFHLVDYRP*PFTGAIGVL--TLITGXXXXXXXXXXXXXXXXXXXXXXXAYQ**RDISR 192
           HP+H+V   P PF  ++ +    L                           Y   RD+S 
Sbjct: 14  HPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMST 73

Query: 193 EGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PPSRITP 372
           E    G HT  V KGL+ G                    H  LSP  E+G + PP  I  
Sbjct: 74  EANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIAD 133

Query: 373 --FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILXAYEY 546
              +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F    AYEY
Sbjct: 134 KTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEY 193

Query: 547 IEASFTIADRIYGSTFFIATGFHGIXVIIGTLFLLICYIRHLNNXFSKNHXFGFEAAA*X 726
             A FTI+D +YG++F+ ATG HGI +I+GT+ LL+          +  H  GFE     
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYY 253

Query: 727 *HF 735
            HF
Sbjct: 254 WHF 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,930
Number of Sequences: 5004
Number of extensions: 34951
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)