Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21l13
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 402 IIQTGTKDVNNNIMELLIMAYACKTSSASSIVGVIPYLPYSKQ 530
           +I  GTK +  N+      AY C+ SS   I   I  L   +Q
Sbjct: 452 LIGNGTKLIIKNVDYADTGAYMCQASSIGGITRDISSLVVQEQ 494


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  KYVSLM*MKYFLWFFQIKYL 94
           KYV+++  + FLW F +  L
Sbjct: 512 KYVAMVLDRLFLWIFTLAVL 531


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 35  KYVSLM*MKYFLWFFQIKYL 94
           KYV+++  + FLW F +  L
Sbjct: 512 KYVAMVLDRLFLWIFTLAVL 531


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 35  KYVSLM*MKYFLWFFQI 85
           KYV+++  + FLW F +
Sbjct: 540 KYVAMVLDRIFLWIFTV 556


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 384 RGKNIYIIQTGTKDVNNNIMELLIMA 461
           RG+ I + +    DV  NIME  I++
Sbjct: 330 RGERIQLTEKNGIDVLGNIMEASILS 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,976
Number of Sequences: 438
Number of extensions: 5356
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)