Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21l01
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.71 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   0.71 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 106 KTKVELVQDIIVATAILHNLCIKHNDVMPNLDVNLENIIDVTGSDNNQDT 255
           KT + +++++ V  A  +  CI   D+  N+  +++NI  +  S N + T
Sbjct: 27  KTIMRILKEVCVLQA--NRACILIKDLFDNVHNHIQNIFKIIKSTNEKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 106 KTKVELVQDIIVATAILHNLCIKHNDVMPNLDVNLENIIDVTGSDNNQDT 255
           KT + +++++ V  A  +  CI   D+  N+  +++NI  +  S N + T
Sbjct: 10  KTIMRILKEVCVLQA--NRACILIKDLFDNVHNHIQNIFKIIKSTNEKIT 57


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 40  RNCIERAFGIWKRRFPVLSLGIKTKVELVQDIIV 141
           RNCI   F +++ +  ++++    KVE+ +  I+
Sbjct: 442 RNCIGARFAVYQTKVGLITILRNHKVEVCEKTII 475


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 72  EETVSSFVIGN*DQS*TGTRYHCCNSHFTQL 164
           +  V ++V+GN D+   GTRY     H   L
Sbjct: 349 QNNVPNWVMGNHDRVRVGTRYPGRADHMIML 379


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 712 FNKXMNNYSALANKKIKLLDAQIDNLNK 629
           F + + NY  + + K+K LDA  + + +
Sbjct: 582 FIESLGNYYKIRDSKVKTLDASHNRITE 609


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +1

Query: 70  WKRRFPVLSLGIKTKVELVQDIIVATAILHNLCIKHND 183
           WK+ F +  LG+   ++ V  ++    I + + +  ND
Sbjct: 108 WKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNIND 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,294
Number of Sequences: 438
Number of extensions: 3199
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)