Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21k17
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   7.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   9.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 112 HELAAYPARIDL 147
           H++ ++PAR+ L
Sbjct: 616 HQIFSFPARLSL 627


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -3

Query: 70  QHSXNTRXEAAQGTTQRHLTERT 2
           ++  + R +      ++HL ERT
Sbjct: 260 EYKKDRRYDQLHNVEEKHLRERT 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 89  GASRNCTTLXK 57
           GASR CT + +
Sbjct: 141 GASRGCTAVLR 151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 89  GASRNCTTLXK 57
           GASR CT + +
Sbjct: 141 GASRGCTAVLR 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,826
Number of Sequences: 438
Number of extensions: 404
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)