Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21k06
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   268   5e-73
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   265   4e-72
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    46   4e-06
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   0.82 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.82 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    27   2.5  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    27   3.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  268 bits (657), Expect = 5e-73
 Identities = 127/196 (64%), Positives = 152/196 (77%)
 Frame = +1

Query: 94  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 273
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 274 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 453
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 454 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 633
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 634 GVLPRDQRWXVVVDLF 681
           G + R   W V+ DL+
Sbjct: 190 GNISRTTAWEVMPDLY 205


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  265 bits (650), Expect = 4e-72
 Identities = 123/200 (61%), Positives = 154/200 (77%)
 Frame = +1

Query: 82  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 261
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 262 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 441
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 442 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 621
           +V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 622 LRLRGVLPRDQRWXVVVDLF 681
           LR+RG L R   W V+ DL+
Sbjct: 185 LRVRGTLSRSAPWDVMPDLY 204


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
 Frame = +1

Query: 127 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 300
           +L++  HLG      N   + ++Y +R +G H+I+L +T   L  A   V +I     + 
Sbjct: 53  LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111

Query: 301 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 417
           +      GQ+ +V+  A       I  R+ PG  TN  ++Q                   
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171

Query: 418 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 585
               ++  P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S   
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231

Query: 586 IGLMWWLLAR 615
             L+  LL+R
Sbjct: 232 TDLIAGLLSR 241


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 217 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 393
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +1

Query: 352 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 516
           +  A P  G       T+ I A F+  +P + ++     D   +   T A    +  + L
Sbjct: 29  YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87

Query: 517 CNTDSPLRFVDIAIPCNTKSSHSI 588
           C+ +S  RF D+A+  NTK +H I
Sbjct: 88  CDRNSK-RFADLAVAANTKFTHFI 110


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 680 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 582
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 480 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 301
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 300 EHISGVLDG 274
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 100 RARLILPT-SLRLFELRLNAYNATGRRNGLKEVL 2
           R   ++P  S RL E     Y+A GR NGLK +L
Sbjct: 112 RIEFVIPKGSDRLVESYSGFYDAIGRDNGLKAIL 145


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 301 RTHQRGSRWLRQHEQPEQVFPRYDA 227
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,784
Number of Sequences: 5004
Number of extensions: 69015
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)