Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21k01
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 95 6e-21
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 91 1e-19
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 88 1e-18
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 88 1e-18
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 83 3e-17
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 54 3e-08
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.090
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.48
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.5
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 7.8
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 95.5 bits (227), Expect = 6e-21
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
Frame = +1
Query: 136 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 315
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 316 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHCCSITSLQLGDSI 492
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 493 QNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLM 672
+ + ++ + P+GV G + +N+P+ + W PAL GN IIK +E P + L
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLY 199
Query: 673 MMELLQ 690
L++
Sbjct: 200 FATLVE 205
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 91.5 bits (217), Expect = 1e-19
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 1/185 (0%)
Frame = +1
Query: 139 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 318
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 319 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 498
QL+ ++A L+ EN+ L +T E GK ++ AE +V ++ + GD +
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPS 140
Query: 499 IAKDMD-THSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLMM 675
+ + S K P+GV + +NFP + AL G T I P+ + P L +
Sbjct: 141 SLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGL 200
Query: 676 MELLQ 690
+ L Q
Sbjct: 201 VRLAQ 205
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 88.2 bits (209), Expect = 1e-18
Identities = 49/184 (26%), Positives = 90/184 (48%)
Frame = +1
Query: 139 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 318
YI G++V + + ++ NP NE + V + + +E A+ A A+ ++ S + R
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERY 86
Query: 319 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 498
++ ++ L+ EN LA +T E GK + DA+G+V+ + ++ GDS +
Sbjct: 87 AILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMS 146
Query: 499 IAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLMMM 678
+ K P+GVVG + +NFP + AL G T +I+P+ + P L +
Sbjct: 147 SNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALA 206
Query: 679 ELLQ 690
+L +
Sbjct: 207 KLAE 210
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 87.8 bits (208), Expect = 1e-18
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 3/187 (1%)
Frame = +1
Query: 136 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 306
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 307 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 486
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 487 SIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGAT 666
+I+ K ++ P+GV G + +NFP ++ W PA+ GNT I+K +E P +
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSA 203
Query: 667 LMMMELL 687
L + + +
Sbjct: 204 LCLTKFV 210
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 83.4 bits (197), Expect = 3e-17
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 6/189 (3%)
Frame = +1
Query: 121 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 288
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 289 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 468
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 469 SLQLGDSIQNIAKDMDTHSY--KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKP 642
+ + ++ + P GV+G + +NFP+ + LW PA+ +GN ++KP
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKP 197
Query: 643 SEQDPGATL 669
SE P + L
Sbjct: 198 SELAPWSCL 206
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 53.6 bits (123), Expect = 3e-08
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Frame = +1
Query: 196 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 375
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 376 KITEEQGKTIADAE-GDVLRGIQSVEHCCS--ITSLQLGDSIQNIAKDMDTHSYKV-PLG 543
++ GKT+ DA G++L ++ + + SL+ ++ K PLG
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGYVKYEPLG 129
Query: 544 VVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLMMMELLQ 690
V+ + ++N+P+ L AL GN ++K SE +T E+++
Sbjct: 130 VIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVR 178
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.090
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 190 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 315
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 154 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 282
Y ++T W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 529 KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 633
K +GVVGG +P P+ P ++TGN +
Sbjct: 291 KGQVGVVGGYPVMGYPPPSPVLQKPDLIMTGNRTV 325
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 166 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 288
KT NW ++TNP V + + EL ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,858
Number of Sequences: 5004
Number of extensions: 57801
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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