Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21j24
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.88 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 601 ACTAR*SSI-IFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 482
           +CT+  S I IFS +G  A  +  P  D  +   G +FL+Y
Sbjct: 376 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 601 ACTAR*SSI-IFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 482
           +CT+  S I IFS +G  A  +  P  D      G +FL+Y
Sbjct: 323 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 307 PPRRNPSLMAPVQL--TSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRRP 471
           PP++NP +  PV    T+    ++     TP T  GM +      E +   H   +P
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPST--GMMYKPFLIPEQTSISHENNQP 876


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 459 TPPPNLAPYNKNEVPLTSLVPSSGGMPSIS 548
           TP  ++   +   VP+TSL  SS  + SI+
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,765
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)