Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21j22
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 323 TKSGIQLHIGTHYSTSLKGTLVVVCWRWETLSR 421
           T S + + +G H    L G L    W+++  S+
Sbjct: 359 TNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSK 391


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 163 EKIAISHISGSAVSLSQNGSTVTEPYGMFQSREQILPHTKGQLDMESGKTRDGHKVRH 336
           +K  IS  SGS  +    GST  +   +   R   LP  + +  + SG +  G    H
Sbjct: 345 DKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNRSGLVSGSSTPGTGREH 402


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 307 FRSPYPADPW 278
           FR P P +PW
Sbjct: 77  FRKPLPIEPW 86


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 307 FRSPYPADPW 278
           FR P P +PW
Sbjct: 77  FRKPLPIEPW 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,355
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)