Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21j14
         (160 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   1.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   7.4  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 4  LVVRLFYRLDCLL 42
          L VRL YR+ CLL
Sbjct: 59 LDVRLDYRISCLL 71


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 4  LVVRLFYRLDCLL 42
          L VRL YR+ CLL
Sbjct: 27 LDVRLDYRISCLL 39


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 58  FGSHVLX*RTRVCXXIXRIXXWTEGRTSLRGL 153
           F +HV   R R+C  +  +     G   L G+
Sbjct: 166 FTAHVTHPRHRLCVFVAGVVFIVSGLLMLVGM 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,618
Number of Sequences: 438
Number of extensions: 406
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 32
effective length of database: 132,327
effective search space used:  2646540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)