Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21j05
         (225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   4.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    20   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   4.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.9  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    19   9.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 108 VIWLFFYILEMISNDNWFHSDWLDGTDDDRL 16
           V+ L  Y+L+  S    F     DGT++D L
Sbjct: 578 VVALVLYLLDRFSPFGRFKLANTDGTEEDAL 608


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 105 IWLFFYILEMISNDNWF 55
           IW++F  L +I    WF
Sbjct: 222 IWVYFVPLFLIIYSYWF 238


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 85  NIKK*PNDIFYMWILHGNIIYKIYKCH 165
           ++KK     F  + LH  I+ K  KC+
Sbjct: 9   SLKKDFGTYFQQYCLHHKILIKKNKCN 35


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 105 IWLFFYILEMISNDNWF 55
           IW++F  L +I    WF
Sbjct: 98  IWVYFVPLFLIIYSYWF 114


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -3

Query: 163 DTCKSCKLYFHVKSTC 116
           D+C  CK    + S C
Sbjct: 41  DSCHKCKYGIAMSSAC 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = -3

Query: 151 SCKLYFHVKSTCRRCHL 101
           +C++  +++  C+ C L
Sbjct: 228 NCEIDMYMRRKCQECRL 244


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = -3

Query: 151 SCKLYFHVKSTCRRCHL 101
           +C++  +++  C+ C L
Sbjct: 25  NCEIDMYMRRKCQECRL 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,969
Number of Sequences: 438
Number of extensions: 803
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)