Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21j04
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    38   0.002
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    36   0.005
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   2.9  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    25   6.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   6.7  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   8.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.9  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   LILIFAEVLGLYGLIVAIYL 61
           LILIFAEVLGLYGLIVA+ L
Sbjct: 132 LILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   LILIFAEVLGLYGLIVAIYL 61
           LILIFAEVLGLYGLIV + L
Sbjct: 134 LILIFAEVLGLYGLIVGLIL 153


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 461 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 553
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   LILIFAEVLGLYGLIVAIYL 61
           ++ IF  VLGL+GLIV + +
Sbjct: 172 VVEIFGSVLGLFGLIVGLLI 191


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 487 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 395
           IKLI +  S++  +L    I  +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +3

Query: 372 ECYRAMTPQYLINLLHICFIFGDRREHF-----FCDFYRHISFICASHPPQHPKIS 524
           + Y A+   +L N   + F   D  E F      CD+ R +S    S P  HP +S
Sbjct: 217 QLYNAIVSTFLKNPKILDFTVEDASEAFDSLRDHCDYKRLLSMGIFSEPDFHPSLS 272


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  YWVFTDLSSPSTCTQNKRPEHTPLPSP 104
           YW +T  +SP+   +N R    P P P
Sbjct: 497 YWYYTVFNSPTIIEKNFRQSVGPKPIP 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,170
Number of Sequences: 5004
Number of extensions: 52112
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)