Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21i09
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 37 0.003
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.18
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 28 0.95
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 28 0.95
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 27 2.2
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 2.2
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom... 27 2.9
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 3.8
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 6.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 6.7
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 25 6.7
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 6.7
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 25 6.7
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 8.9
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 25 8.9
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 8.9
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.9
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 278 CEICTKPLNEGECIRL--TCYHVFHWSCAESKYRALPRTTAPAGYQCPSC 421
C +CT +N I TCYHVFH SC + ++CP C
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYC 246
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 30.7 bits (66), Expect = 0.18
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 278 CEICTKPLNEGE-CIRLTCYHVFHWSCAESKYRALPRTTAPAGYQCPSCATLVFPP 442
C IC + +G+ + L C H FH C + + + CP+C T V PP
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPC-------IAKWIVDYRHACPTCNTEVPPP 369
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 269 NPICEICTKPLNEGECIRLTCYHVFHWSCAESK 367
N C C +PL + C H FH SC K
Sbjct: 834 NESCWHCNQPLFSEPFVLFPCQHAFHRSCMLEK 866
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 181 SECLRKLYGYKSSKVYNSVISSMAARQ*LQSHM*DLYKTIK 303
S+ L K+ G+K+S V+ IS+++ +Q DLYK K
Sbjct: 343 SDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK 383
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 275 ICEICTKPLNEGECIRLTCYHVFHWSCAESKYRALP 382
+C IC K I TC H F CA ++YR P
Sbjct: 253 VCLICKKDYRSP--IATTCGHHFCEQCAITRYRKTP 286
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 383 RTTAPAGYQCPSCATLVFPPPNLVSPVADVLKEK 484
+ TAPA +C LV PP +L +PV++++K K
Sbjct: 101 KETAPAS-ECTRIFYLVLPP-HLFAPVSELIKSK 132
>SPBC577.03c |||GCN5-related N-acetyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +2
Query: 191 CENCMVTNHPKCIIQSYLQWLQDSDYNPICEICTKPLNEGECIRLTCYHVFHWSCAESK 367
C N ++ + KC + Y W+++ + + C++PL E ++ WS E K
Sbjct: 11 CGNLILVPYQKCHVLKYHNWMKNEELQEL--TCSEPLTLDEEYQMQA----SWSTDEDK 63
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +2
Query: 179 RVNVCE-NCMVTNHPKCIIQ 235
+VNVC NCM N PK I +
Sbjct: 222 KVNVCYINCMTINEPKAIFE 241
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 199 IFANIHSMFETKLICHSS 146
IF N HSM++ KL H++
Sbjct: 164 IFCNFHSMYQIKLSIHAT 181
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 263 DYNPICEICTKPLNEGECIR-LTCYHVFHWSCAES 364
D C IC + +R L C HVFH C ++
Sbjct: 200 DEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDT 234
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 98 RIPKNKTKMGLCKCPKRRVTNQFCFEHRVNVCENCM 205
R + +TK G C KRR+ C + R +C NC+
Sbjct: 36 RQARKRTKTGCLTCRKRRIK---C-DERKPICYNCI 67
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 191 CENCMVTNHPKCIIQSYLQWLQDSDYN-PICE 283
CE C H KC+ S + QD + PIC+
Sbjct: 1112 CEICHEWYHAKCLKMSKKKLRQDEKFTCPICD 1143
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +2
Query: 266 YNPICEICTKPLNEGECIRLTCYHVFHWSCAES 364
++ C CT P + + C H+FH C ++
Sbjct: 31 FDGCCPQCTSPGDNCPIVWGKCKHIFHAHCIQN 63
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 239 YLQWLQDSDYNPICEICTKPLN 304
Y + + + +P CEIC P+N
Sbjct: 84 YRSYSSNKEDHPPCEICNSPMN 105
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 8.9
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 401 GYQCPSCATLVFPPPNLVSPVADVLKEKLAGVNWARAGLGLPLLSEDQDLKGAASRRSQS 580
GY P C L+ PN P+ + L W +P LS+ Q L + RSQ
Sbjct: 104 GYTIPECQKLLPSSPNGKQPLPESL-------FWLLVTGEIPTLSQVQALSADWAARSQL 156
Query: 581 P 583
P
Sbjct: 157 P 157
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 340 FSLVLRRV*IPSITEDHSTSWLSVSIMCNISIPSS 444
F L L+R IPS H + +++ NI++PS+
Sbjct: 157 FPLQLKRAAIPSPDTIHKRIFPPTNLVANITLPST 191
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +2
Query: 272 PICEICTKPLNEG--ECIRLTCYHVFHWSCAE 361
P C +C + ++ I + C H FH C +
Sbjct: 206 PTCVVCLERMDSSITGLITIVCQHTFHCPCLQ 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,475
Number of Sequences: 5004
Number of extensions: 58812
Number of successful extensions: 156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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