Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21i09
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 214 ICNHTIFANIHSMFETKLICHSSLGTLTQAHFGFIFWYPAFTLKRNYLNSKH 59
           IC   I    H++    +I    L  + Q       W P   ++RN LN +H
Sbjct: 144 ICTSGIVGRTHTV--GYIIIGFLLAGIVQPFLIHWIWTPHGWMRRNVLNKQH 193


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +2

Query: 302 NEGECIRLTCYHVFHWSCAESKYRALPRTTAPAG 403
           ++G CI +    V++ SC E           P G
Sbjct: 174 DQGACISILAIKVYYISCPEISVNFAHFPATPTG 207


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 229 YTLWMICNHTIFAN 188
           Y+L ++C H IF N
Sbjct: 11  YSLALLCLHAIFVN 24


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 229 YTLWMICNHTIFAN 188
           Y+L ++C H IF N
Sbjct: 11  YSLALLCLHAIFVN 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,823
Number of Sequences: 438
Number of extensions: 3965
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)