Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21h20
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.29 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 415 LNFSRASLALDISSLINTSLSEYKDRATISSNILVS-A*NSLFSDFPFKLSLLCFSVT 245
           +NFS+ +  +DIS L+N   +     ++++SN+ V+   N +  + P   S++  S T
Sbjct: 507 INFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSIIVDSST 564


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 515 YIPGLWYWYD 544
           Y+  LWYW D
Sbjct: 277 YVMSLWYWID 286


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 162 APGCEMITSRPTNVFFGSKLKEFQHFSTVTEKQSSESLKGKSEKR-EFQAETRMLLDIVA 338
           +P   ++TS+P       K K   H +  TEK +   ++  + K    + E   ++D + 
Sbjct: 43  SPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLR 102

Query: 339 RSLY 350
             L+
Sbjct: 103 NDLF 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,770
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)