Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21g12
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.2  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 58 YLTINFYFFLYFDNL 14
          ++ IN++ FLYF++L
Sbjct: 16 FILINYFIFLYFNSL 30


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 490 FLLFHSSENLLLICVVSLCSTLRI 419
           +LLF +    L  CVV  CST  +
Sbjct: 141 YLLFATLPLRLSFCVVLACSTATV 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 406  VEAKEFVGLNRVKQHRLVTDSLKNEIAEMHGIRIHTTPA 522
            V  K+     + +Q  ++  S    I  +HG+++  TPA
Sbjct: 1225 VLGKQQPSQQQTQQQPIILPSQLLNIKTLHGLKVIPTPA 1263


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 386 PQPPDISCTLMYVIPGIAFFNASVSCC 306
           P+PP+  C+L   +     + A   CC
Sbjct: 580 PEPPESVCSLPCEVGQAKKYVAGEQCC 606


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 147 CLAHVVRSKTYFLLNLYV 94
           C    VRS  Y+L+ +Y+
Sbjct: 212 CEIQFVRSMGYYLIQIYI 229


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 147 CLAHVVRSKTYFLLNLYV 94
           C    VRS  Y+L+ +Y+
Sbjct: 212 CEIQFVRSMGYYLIQIYI 229


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 147 CLAHVVRSKTYFLLNLYV 94
           C    VRS  Y+L+ +Y+
Sbjct: 151 CEIQFVRSMGYYLIQIYI 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,707
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)