Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21g07
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.93 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 702 NTFHETAKLSFENRCSTQ 649
           +T H T KL+F+NR  TQ
Sbjct: 172 DTVHVTFKLTFDNRAFTQ 189


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +1

Query: 376 TSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRN 519
           TS +   V+ Y   KS +GF     +   P+   +       P  LRN
Sbjct: 163 TSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRN 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 250 GIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPC 137
           G+ PH   R     GS+    D   R +  + P+PP C
Sbjct: 534 GLCPH---RRRANSGSTSSGDDELHRASLSKTPQPPQC 568


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 535  ENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDE 708
            +N F ++ I I+    T +  S +TE    E+G ++  L T      +L+  +  ++E
Sbjct: 830  QNKFKDI-IKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALELKKALSSINE 886


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 172 PNQGELPEPPPCCCMILHDSVS 107
           P    +P+P P  C ++  SVS
Sbjct: 582 PKLKGIPDPXPNTCKVIASSVS 603


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 435 ESSG*FLCIVNHN 397
           E SG +LCIVN++
Sbjct: 280 EDSGKYLCIVNNS 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,697
Number of Sequences: 438
Number of extensions: 4188
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)