Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f22
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   1.6  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   6.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.4  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   8.4  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.4  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 286 IASIKRYYFKGAKQLIQKNVHFNLLSIRRGTDNLNDYRLH*HIALSKDSFADLL 447
           +  +  YY K +  L    +   LL + +GT  LN Y     I L + +FA L+
Sbjct: 726 LRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQI-LGQTAFAGLM 778


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 146 RVTEIKIYSNVDNNRMETINVRLNRKSTFN*VHAKIEGNEIGLTKLTK 3
           R+ E++   N D N++ET+N R++  +        I  N+    KL K
Sbjct: 814 RLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAK 861


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 293  QSSVTISRAQSN*YKKMYTLTFCLYVAELTTSTIIGYINISH*VRTH 433
            QSSVT + A  +  K     TF   +  LTTS  +  +++ H +R H
Sbjct: 1838 QSSVTFTDADGSTRK-----TFSKRLENLTTSNTLKSLSVDHFIRKH 1879


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 310 FKGAKQLIQKNVHFNLLSIRRG 375
           +KGA+ L +KN+H  + ++  G
Sbjct: 22  YKGAEHLCRKNIHNQVYNVETG 43


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 93  CFHSIIIYIRIYLYFSYSLLFVEISKLF 176
           C   II+ + +Y  F+Y L+F+ +  LF
Sbjct: 310 CTEPIIMALGLYNGFAYGLIFLYLDGLF 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,410
Number of Sequences: 5004
Number of extensions: 36548
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)