Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21f19
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 77 2e-14
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 73 2e-13
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 63 2e-10
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 31 1.0
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 31 1.0
06_02_0101 - 11816507-11816878,11817571-11817840,11818014-118180... 30 1.3
06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904 29 4.1
12_01_0408 - 3226191-3228005 28 5.4
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414... 28 7.2
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807... 28 7.2
03_04_0220 - 18741485-18741915,18742007-18742190 28 7.2
11_06_0610 - 25449085-25453284 27 9.5
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 27 9.5
03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098 27 9.5
01_07_0157 - 41547505-41547861,41547949-41548078,41548180-415484... 27 9.5
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Frame = +3
Query: 153 MAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLV 332
MAIF+A + +L+G+TT GN + N +L+ R D+P+ GS ++
Sbjct: 1 MAIFVALRSPEV----ELLGLTTIFGNVYTTLATRNALHLLEAVGRTDIPVAEGSHVTIK 56
Query: 333 KTPEI---TDYFGKDGLGDSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGALTN 503
K ++ + G DGLG+ + P P ++A L++ + + G +T++ +G LTN
Sbjct: 57 KATKLRIASFVHGSDGLGNQ-NFPPPTGKPLDQSAAAFLVEQANLYPGQVTVVALGPLTN 115
Query: 504 LALAIKTDPAFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEA 632
LALAI+ DP+F ++ + I GA ++ P AE N D +A
Sbjct: 116 LALAIELDPSFPKKIGQIVILGGAYSVNGNVNPAAEANIFGDPDA 160
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 72.9 bits (171), Expect = 2e-13
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Frame = +3
Query: 144 DDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKS 323
DD+M I +A ++IG+TT GNT N + N + + A +VP+ GS
Sbjct: 45 DDSMTILMAFRAPTV----EIIGLTTIFGNTTTKNATQNALLLCERAGHPEVPVAEGSAE 100
Query: 324 SLVK-TPEITDYF-GKDGLGDSGDVYPDLVPPHTENAVNALIQLSKTHEGNLTIITIGAL 497
L P + D+ G DGLG+ P ENA ++ G ++I+ +G L
Sbjct: 101 PLKGGEPRVADFVHGSDGLGNLFLPAPTSKKVD-ENAAEFMVNKVSQFPGEVSILALGPL 159
Query: 498 TNLALAIKTDPAFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVEA 632
TN+ALAIK DP+F ++ + + GA P AE N + D EA
Sbjct: 160 TNVALAIKRDPSFASKVKKIVVLGGAFFAAGNVSPAAEANIYGDPEA 206
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Frame = +3
Query: 282 AKRQDVPIYRGSKSSLVK-TPEITDYF-GKDGLGDSGDVYPDLVPPHTENAVNALIQLSK 455
A R +VP+ GS L P + D+ G DGLG++ P ++A L+
Sbjct: 83 AGRPEVPVAEGSAEPLKGGKPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVS 142
Query: 456 THEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYI--GAGHIHTEEYPTAEFNAHMDVE 629
G ++++ +G LTN+ALA+K D +F ++ + + GA P+AE N H D E
Sbjct: 143 ESPGEISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAFFAAGNATPSAEANIHSDPE 202
Query: 630 A 632
A
Sbjct: 203 A 203
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 471 LTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHTE 587
+TI+T G LTNLA + +D + VY+ GHI +
Sbjct: 661 ITILTNGPLTNLANIVLSDRNASSVIKSVYVVGGHIRDD 699
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 465 GNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIHTEE 590
G T++ GA TNLAL + P + VY+ G + +
Sbjct: 151 GPTTVLLFGAHTNLALLLMAHPRLARNIDRVYVSGGAVRAAD 192
>06_02_0101 -
11816507-11816878,11817571-11817840,11818014-11818076,
11818610-11819002
Length = 365
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +3
Query: 210 GVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGD 389
GV S+ + ++D+ S N + A+ D I S +++K P ITD+FG+ + +
Sbjct: 281 GVFESSWDPHDDSKS-NGDAVADCARSAD-SIANCSIRAVIK-PLITDHFGESIVDELFQ 337
Query: 390 VYPDLVPPHTE 422
VY LV H E
Sbjct: 338 VYVPLVAKHLE 348
>06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904
Length = 345
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 210 GVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGD 389
GV S+ + ++D+ S N + A+ D I S +++K P ITD+FG+ + +
Sbjct: 261 GVFESSWDPHDDSKS-NGDVVADCARSAD-SIANCSIRAVIK-PLITDHFGESIVDELFQ 317
Query: 390 VYPDLVPPHTE 422
VY +V H E
Sbjct: 318 VYVPIVAKHLE 328
>12_01_0408 - 3226191-3228005
Length = 604
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 287 FGDLQYSLVIVRNVVFVGVTVACRNSN*LRTGMILLEQSGQEYG 156
F D+ V +V +GV AC +S + TG+ LL EYG
Sbjct: 307 FSDMVGRGVQPNSVTLLGVLHACSHSGLVDTGLQLLRSMRSEYG 350
>04_04_1016 -
30139691-30139951,30140066-30140134,30141267-30141470,
30141552-30141808,30141899-30141983,30142080-30142164,
30142269-30142795
Length = 495
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 141 GDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSK 320
GD A I L AG + GVT + N+ ++ Y + +K + PIY +
Sbjct: 94 GDAATVICLDDYHSLDRAGRKERGVTALDPRANDFDLMYRQLKAIKEGRAVAKPIYNHA- 152
Query: 321 SSLVKTPEI 347
+ L+ PE+
Sbjct: 153 TGLLDPPEL 161
>04_04_1009 -
30078988-30079248,30079363-30079431,30080564-30080767,
30080849-30081105,30081196-30081280,30081377-30081461,
30081566-30082092
Length = 495
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 141 GDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVPIYRGSK 320
GD A I L AG + GVT + N+ ++ Y + +K + PIY +
Sbjct: 94 GDAATVICLDDYHSLDRAGRKERGVTALDPRANDFDLMYRQLKAIKEGRAVAKPIYNHA- 152
Query: 321 SSLVKTPEI 347
+ L+ PE+
Sbjct: 153 TGLLDPPEL 161
>03_04_0220 - 18741485-18741915,18742007-18742190
Length = 204
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 103 ELRGNS*STMTLAVMMLWPYSWPLCSRSIMPVL 201
E G + + + AV +LW +WPLC ++ VL
Sbjct: 70 EAAGRTINPVHGAVGLLWTGNWPLCQAAVETVL 102
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 514 PLKRTPPFSADSHTSTSEPDTYIP 585
P +++PP SHTS P+ Y P
Sbjct: 745 PEEKSPPIPPTSHTSPPTPEEYTP 768
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 389 CLPRSGTAAYRKCRQ-RSYTIV*DT*RQPYHHHYR--RANQLSFGH 517
CLP S AA ++CRQ R + V + PY H +R A L+F H
Sbjct: 425 CLPESLRAAVQRCRQSRPASKVVEW--APYRHSFRYLLARDLAFPH 468
>03_02_0869 - 11944309-11945004,11945522-11945838,11945933-11946098
Length = 392
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 464 RQPYHHHYRRANQLSFGH 517
RQP HHH+++ FGH
Sbjct: 273 RQPDHHHHQQQQHALFGH 290
>01_07_0157 -
41547505-41547861,41547949-41548078,41548180-41548469,
41548561-41548742,41548838-41549057,41550806-41550824,
41551104-41551364,41551466-41551584
Length = 525
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 36 SVKLSYTLFSILILSRYCECMTGIKRKFVIDNDAGGDDAMAIFLAALFEKYHAG 197
SV LS T+F + + +T I DNDAGG+ F +Y +G
Sbjct: 285 SVALS-TVFGWIYIVSLTSAVTDIPYLLSPDNDAGGNAVAQAFYTTFHRRYGSG 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,183
Number of Sequences: 37544
Number of extensions: 340651
Number of successful extensions: 992
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -