Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21f19
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical pr... 90 1e-18
AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical... 85 4e-17
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 30 1.6
X59156-9|CAB56747.1| 108|Caenorhabditis elegans transposase pro... 29 2.1
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.5
U39995-5|AAF99994.4| 250|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81047-2|CAB02828.1| 376|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical p... 27 8.6
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical... 27 8.6
>U23139-5|AAN65330.1| 374|Caenorhabditis elegans Hypothetical
protein F13H8.3 protein.
Length = 374
Score = 90.2 bits (214), Expect = 1e-18
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 12/187 (6%)
Frame = +3
Query: 114 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 293
K +ID D DD + +A + ++I +TT +G + + N R+L+ +
Sbjct: 24 KLIIDTDGVYDDIRGLTIALTNQNV----EVIAITTVHGGVTANQSAANVARLLRAIGKH 79
Query: 294 DVPIYRGSKSSLVKTPEI---TDYFGKDGLGDSGDVYPDLVP-----PHTENAVNALIQL 449
+VP++ G++ SLV I + FG DG+G DV P +P NAV+A+I L
Sbjct: 80 NVPVFIGAQDSLVPKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINL 139
Query: 450 SKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHI----HTEEYPTAEFNAH 617
+K+ + ++ ++ +G LTN+A+AI+ DP R+ V I G+ +T+ TAEFN
Sbjct: 140 TKSTK-DIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGNYLGVGNTQFNSTAEFNFL 198
Query: 618 MDVEAYH 638
MD EA H
Sbjct: 199 MDPEAAH 205
>AL032637-12|CAA21614.1| 338|Caenorhabditis elegans Hypothetical
protein Y43F8C.13 protein.
Length = 338
Score = 85.0 bits (201), Expect = 4e-17
Identities = 58/190 (30%), Positives = 99/190 (52%), Gaps = 11/190 (5%)
Frame = +3
Query: 96 MTGIKRKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRIL 275
MT K K VID+D DD AI LA H +++ T +G D N +R +
Sbjct: 1 MTVDKVKLVIDSDGVSDDVRAISLAL----QHPKAEILAFTAVHGCVTVDQACANIKRTI 56
Query: 276 KVAKRQDVPIYRGSKSSLVKTPE---ITDYFGKDGLGDSGDVYPDLVPPHTE----NAVN 434
+ R ++P+Y+G+ S++ P+ ++D+FG DG+GD + +P + E +A
Sbjct: 57 RANDRSNIPVYKGAAKSILSLPKDDTVSDFFGIDGIGDKPEEFPKVERSDFEGEGKHASL 116
Query: 435 ALIQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIGAGHIH----TEEYPTA 602
ALI + + + + T++TIG LTN+A+A++ F + + I G+ + + +A
Sbjct: 117 ALIDILRENR-DATLVTIGPLTNVAIALQLCEEFSTYPSRLVIMGGNYYAVGNVDGGSSA 175
Query: 603 EFNAHMDVEA 632
E+N H D EA
Sbjct: 176 EYNFHGDPEA 185
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 279 VAKRQDVPI-YRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVNALIQLSK 455
+AKR +VP Y GS + V + TD+ KD L D G V L P+T N + +L K
Sbjct: 535 LAKRFNVPHPYPGSDTVGVPALQKTDWKRKDRLADIGGVSATLGLPNTANEIEMRERLLK 594
Query: 456 T 458
+
Sbjct: 595 S 595
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 264 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 386
Q+++ V + +V I G S KT ++ Y +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 264 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 386
Q+++ V + +V I G S KT ++ Y +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487
>X59156-9|CAB56747.1| 108|Caenorhabditis elegans transposase
protein.
Length = 108
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 440 KSVDGIFCMRRYQIWVDIPTVSEAVFTEVVRDFRGFHQRGFRTSINWHVL 291
++V+ I R +W TV+ +FT + D +G +GF+ I W ++
Sbjct: 49 RAVEKIQTRRNRSVWCK--TVNLIIFTSICSDCQGASFKGFQYQILWKII 96
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 193 PVLN*LELRQATVTPTKTTFLTITREY*RSPKD 291
PVL+ E R+ VT TT T+TREY P+D
Sbjct: 2816 PVLSEKE-REHQVTSETTTTTTVTREYNDEPED 2847
>U39995-5|AAF99994.4| 250|Caenorhabditis elegans Hypothetical
protein M60.6 protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 399 DLVPPHTENAVNAL-IQLSKTHEGNLTIITIGALTNLALAIKTDPAFLGRLAHVYIG 566
D PPH NA+ ++ +QLS EG L+ T + +L A+ FLG + V G
Sbjct: 8 DSSPPH--NALTSIRLQLSHLKEGRLSETTTVKMLSLLKALANVHVFLGIIMIVLSG 62
>Z81047-2|CAB02828.1| 376|Caenorhabditis elegans Hypothetical
protein C41G6.3 protein.
Length = 376
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 315 NLYKLARPVFWRPSVFSGYCKKRCLRWCY 229
N Y A + W P +F+G + CLR+ Y
Sbjct: 85 NFYNQAGELGWLPLLFAGSVEMSCLRYDY 113
>Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 290 SFGDLQYSLVIVRNVVFVGVTVACRNSN*LRT 195
SFGD QY I+ N V VTV R+ + +T
Sbjct: 492 SFGDSQYEYAIISNWVKYPVTVLVRDPDTFKT 523
>Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 290 SFGDLQYSLVIVRNVVFVGVTVACRNSN*LRT 195
SFGD QY I+ N V VTV R+ + +T
Sbjct: 492 SFGDSQYEYAIISNWVKYPVTVLVRDPDTFKT 523
>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
protein Y71F9AL.17 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 165 LAALFEKYHAGPQLIGVTTS--NGNTNEDNVSYNNQRILKVAKRQDVPIYRG 314
L L K Q+ V T+ NT+ ++Y+ V RQ VP+YRG
Sbjct: 1137 LLELAPKPEVAAQIRKVLTAAEKDNTDAHQLTYDEHNPFVVCSRQFVPLYRG 1188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,397
Number of Sequences: 27780
Number of extensions: 290243
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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