Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f13
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.79 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.2  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    26   5.6  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   5.6  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.4  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 343 FWCTERLFHTSKPICCTLDQITIINYKLYTHR 248
           F C E  FHTS+ +  T D+IT+   +L   R
Sbjct: 320 FLCVEEPFHTSRNLANTADEITMKGIQLEFRR 351


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/52 (23%), Positives = 33/52 (63%)
 Frame = -2

Query: 632 SATLPLSSNTLSITLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSASSFTRI 477
           SAT  ++ +++S +++ + ++ SSY + +S    ++    ++ +++SS+T I
Sbjct: 785 SATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSI 836


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 463 SKRQEILVKLEADKKLTE-NILFDENWQLSQFWYDEKTVHSLVKVIDKVLDDRG 621
           S+R+E+ +K     KL + NI+FD N   S     E    +L+++ID V ++RG
Sbjct: 217 SEREELFIK-----KLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENRG 265


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +3

Query: 330 SVHQNKIFNLRINC 371
           SVH+N+I++L+I+C
Sbjct: 51  SVHENRIYSLKIHC 64


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +1

Query: 541 QLSQFWYDEKTVHSLVKVIDKVLDDRGK 624
           ++++  YD+  +  ++ +ID+ L+D+GK
Sbjct: 44  EIAELTYDQNEMLEVMDIIDRRLNDKGK 71


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = +1

Query: 493 EADKKLTENILFDENWQLS 549
           +A+++L++NI+ DE+W L+
Sbjct: 21  QAEEELSKNIVTDEHWSLA 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,488
Number of Sequences: 5004
Number of extensions: 51962
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)