Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f13
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428     53   2e-07
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    30   1.9  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    29   4.4  
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762...    28   5.8  

>03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428
          Length = 241

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
 Frame = +1

Query: 397 DEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEKTV 576
           ++D P LSA    AL+EF  EQ +        E ++      L  E+W+LSQFWYDE+T 
Sbjct: 17  EDDRPQLSAAAAEALREFLLEQGRDGGE----EGEEGGGGVELVAEDWRLSQFWYDERTA 72

Query: 577 HSLVKVIDKVLDDRG-----KVALISCPTLFVPL 663
            +L + + +++   G      VA ++CPTL+  L
Sbjct: 73  RALAEEVARLVSLSGPASSAAVACVACPTLYTYL 106


>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
            24200626-24201561,24201655-24201816,24202026-24202304,
            24202399-24203171,24206142-24207363
          Length = 1359

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 460  QSKRQEILVKLEADKKLTENILFDENWQLSQF 555
            +S++ E +VKL ADKK   + L +   QLSQF
Sbjct: 1156 RSEKDEQIVKLTADKKNLHDRLHEAETQLSQF 1187


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 406 VPTLSAETF---AALQEFYAEQSKRQEILVKLEADKKLTENI 522
           +PT   E F   AAL EF  E    Q +L K + +KKL + I
Sbjct: 57  LPTRDQEQFDKTAALTEFLQEHRLEQTVLFKRKKEKKLEQTI 98


>08_02_0386 -
           16575636-16575698,16575799-16575858,16575947-16576239,
           16576361-16576517,16576601-16576948,16577047-16577177,
           16577417-16577882,16578425-16579132
          Length = 741

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 427 TFAALQEFYAEQSKR---QEILVKLEADKKLTENILFDENWQLS 549
           TF   Q+F+   ++R       ++LEA K   E  L D+ W+LS
Sbjct: 507 TFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLS 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,223
Number of Sequences: 37544
Number of extensions: 275145
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)