Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f13
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical pr...    58   4e-09
U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z73428-4|CAH60777.1|  218|Caenorhabditis elegans Hypothetical
           protein M142.8 protein.
          Length = 218

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +1

Query: 388 MEADEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDE 567
           M   +D+P LSA+T AAL  F AEQ   QE + +L++   + E I  DE+WQLSQFWYD+
Sbjct: 1   MSDTDDIPQLSADTLAALSMFQAEQ---QEKIEQLQSG--IIEKI--DEDWQLSQFWYDD 53

Query: 568 KTVHSLV 588
           +T   LV
Sbjct: 54  ETSRKLV 60


>U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical
           protein C06A5.6 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 529 DENWQLSQFWYDEKTVHSLVKVIDKVLDDRGKVALISCPTL 651
           D N Q+++F+ D+    S V  +    DDRG   +  CP++
Sbjct: 229 DLNGQINEFYKDKVKRKSGVHALIYKKDDRGDKLIFDCPSI 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,943
Number of Sequences: 27780
Number of extensions: 297042
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)