Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21f12
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 1.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 1.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 1.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 2.4
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 27 2.4
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 27 2.4
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 4.2
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 5.5
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 5.5
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 5.5
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 26 5.5
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 9.6
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 9.6
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.6
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 9.6
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 25 9.6
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 226 EILTWKPKYNFYEQSSENIWNRSLEVIKDVVSGTD-AANIKGIGFDATCSLVALDKNFNA 402
+++TW P + S ++ S+ +D G D A + G T +A N N
Sbjct: 427 KVVTWHPTEDLLVSGS---YDNSICFWRD--DGDDWALTCQLQGHTNTVWALAFSPNGNT 481
Query: 403 IAVSDSNNNDQNVIMWMDHRAYNEANAINKTN 498
+A +D ND NV +W+ + + I+ TN
Sbjct: 482 LASAD---NDGNVFLWIKISSNEDVATIDSTN 510
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 166 LNPRLRQQNKQHYSYLRVLKVLEE 95
++ +LR + K+ SYL +LKV+E+
Sbjct: 575 VDEKLRLEKKEQLSYLEILKVIEQ 598
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 106 LSRLANMSNAVYFVGVDVGSSSVRAALVDNRGHVHKTSVREILTWKPKYN 255
L +N S +Y VDV + VD R V K S++ + T K KY+
Sbjct: 121 LLSFSNESKELYLKAVDVVMPLLVKFSVDLRPKVRKISIQVLQTLKQKYD 170
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Frame = -2
Query: 247 WVSKLKFLAPKFYVHV---LCYP-QVQHERCL----NPRLRQQNKQHYSYLRVLKVLEER 92
W SKL +H+ +CY HE + NP+L N Y YL ++L +
Sbjct: 836 WNSKLYTRKDLISIHISLAMCYWWSKDHENAIKVLKNPKLSSSNV--YDYLPAFRLLTKI 893
Query: 91 KMYRYKS 71
+ Y+Y+S
Sbjct: 894 EYYKYQS 900
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 383 KATNEHVASKPMPLILAASVPLTTSLITSSERFQIFSEDCS*KLYL 246
K N H SKP P ++S LI + ++F + S YL
Sbjct: 100 KFVNRHTGSKPQPNFYSSSESSEKELIWFQPKMRVFLQSLSNMSYL 145
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 157 VGSSSVRAALVDNR---GHVHKTSV--REILTWKPKYNFYEQSSENI 282
VG S+R ++ +H+T + RE L + PKYN YE+ +N+
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNL 104
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 157 VGSSSVRAALVDNR---GHVHKTSV--REILTWKPKYNFYEQSSENI 282
VG S+R ++ +H+T + RE L + PKYN YE+ +N+
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNL 104
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 460 RAYNEANAINKTNHTVLKYVGGKVSLEMQMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWK 639
R + AN T + G K L +WL L++ +S Y +F PD L K
Sbjct: 223 RTHPNANVYALTTPLLTSSSGQK--LGKSAGNAIWLDPKLTDSYSLYQYFISAPDDLACK 280
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 193 NRGHVHK--TSVREILTWKPKYNFYEQSSENIWN 288
N GHV+ TS + +T + N Y+++S+ WN
Sbjct: 617 NAGHVNSMLTSKAKTVTRRGNANIYKKASDRPWN 650
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 220 PKFYVHVLCYPQVQHERCLNPRLRQQNKQHYSYLRVL 110
PK + LC V+H R + + HY +R L
Sbjct: 137 PKDEISFLCQVPVKHSRDSQKNMIKSENSHYEIIRTL 173
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 347 PLILAASVPLTTSLITSSERFQIFSEDCS 261
P +L+ +V + L+ S Q +SE+CS
Sbjct: 586 PKLLSTAVSMFEDLVRYSSHLQYYSEECS 614
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 187 QVQHERCLNPRLRQQNKQHYSYLR 116
Q+ +++C P ++ QH SYLR
Sbjct: 103 QINNDKCWEPIIKYIRDQHSSYLR 126
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 526 KVSLEMQMPKLLWLKNNLSEKWS 594
++SL Q +++LKN +S WS
Sbjct: 46 EISLPTQQAAVIYLKNRVSRSWS 68
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 112 LKVLEERKMY--RYKSALHDFKHLRSYHVIIQD 20
L VL++ K Y S+ H HLR+YH + D
Sbjct: 125 LSVLDDTKSQYANYSSSSHVLWHLRNYHYLNLD 157
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 169 CLNPRLRQQNKQHYSYLRVLKVLEE 95
C + N QH SYL LK LE+
Sbjct: 142 CYEEYINLSNVQHISYLEYLKNLED 166
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 617 RSKKCPYCDHFSDKLFFSHSNLGI 546
++KK YC H+S K F ++ L I
Sbjct: 21 KTKKFLYCRHYSSKSFIDNAPLRI 44
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -2
Query: 217 KFYVHVLCYPQVQHERCLNPRLRQQNKQHYSYLRVLKVLEERKMYRYKSAL 65
+F + + + H+ CLN R + S R + LEER K L
Sbjct: 224 QFAKEAMAHQSLDHDECLNVRWATTDPNPASQARNQRRLEERAANAVKKLL 274
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -2
Query: 229 FLAPKFYVHVLCYPQVQHERCLNPRLRQQNKQHYSYLRVLKVLEERKMYRYKSALHDFKH 50
FLAPKF+ VL Y CL+ + SY R++ K +H F+
Sbjct: 292 FLAPKFFDAVLAY-------CLSQLFNWSCQNISSYQRLVSFAHLYSYTSVKCLVHWFQI 344
Query: 49 LRSYHVIIQDS 17
+RS + D+
Sbjct: 345 MRSAEFRMYDN 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,883
Number of Sequences: 5004
Number of extensions: 51121
Number of successful extensions: 190
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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