Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f12
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   6.7  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    28   6.7  
Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U42439-5|AAA83509.2|  542|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/70 (21%), Positives = 36/70 (51%)
 Frame = +1

Query: 250 YNFYEQSSENIWNRSLEVIKDVVSGTDAANIKGIGFDATCSLVALDKNFNAIAVSDSNNN 429
           Y+  EQS+E++ +++ +V  ++++ +    +  +    T  L  LD+N +++A+   NN 
Sbjct: 385 YDIKEQSTESLLSKNSKVFGNLIT-SGGRTVFEVCDSPTVELCELDRNTHSLAMQYQNNR 443

Query: 430 DQNVIMWMDH 459
               +    H
Sbjct: 444 SSGSLSRRSH 453


>AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical
           protein K05F6.11 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 220 VREILTWKPKYNFYEQSSENIWNRSLEVIKDVVSGT-DAAN 339
           + EI T    YNF+  + +N+W+    V+KD +    DA N
Sbjct: 234 ISEIETLTGCYNFFIDNEDNLWSGCHPVLKDALGHLGDATN 274


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 617 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTY 513
           R +  PY  H+SD  F S  + G   S L  PP Y
Sbjct: 63  RRQALPYVTHYSDSGFGSAPSAGSSCSYLPPPPPY 97


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 617 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTY 513
           R +  PY  H+SD  F S  + G   S L  PP Y
Sbjct: 63  RRQALPYVTHYSDSGFGSAPSAGSSCSYLPPPPPY 97


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 544 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 651
           Q P L++ KNN   + +    F DLP +  + ATGS
Sbjct: 36  QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 67


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 544 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 651
           Q P L++ KNN   + +    F DLP +  + ATGS
Sbjct: 162 QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 193


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 544 QMPKLLWLKNNLSEKWSQYGHFFDLPDFLTWKATGS 651
           Q P L++ KNN   + +    F DLP +  + ATGS
Sbjct: 162 QTPNLIYEKNNTVRQCT----FLDLPSYTVYSATGS 193


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 289 DSKYFQKIVHKSYIWV-SKLKFLAPKFYVHVLCYPQVQHERCLNPRLRQQNKQHYSYLRV 113
           D   FQ++  KS+  + SKL  L PK Y  +    Q+Q    +  R+   + QHY Y R 
Sbjct: 247 DPNIFQELDTKSHEAIFSKLLLLNPKAYKFIAKATQIQESVVIGKRV---HAQHY-YARN 302

Query: 112 LKVLEERKMYRYKSAL 65
           + ++       Y  +L
Sbjct: 303 IDIMTSLTSVLYGKSL 318


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 105 FWKNEKCIGTKVLYTILSIYGLITLLFKTRKIF 7
           FWK+  C+G  V+Y ILSI  + T+++ +  IF
Sbjct: 197 FWKD--CLGMAVVYIILSI-SISTIIYFSLNIF 226


>Z82096-3|CAD45613.1|  548|Caenorhabditis elegans Hypothetical
           protein ZK909.2c protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 484 INKTNHTVLKYVGGKVSLEMQMP----KLLWLKNNLSEKWS 594
           ++  +H  ++  G  V +E Q+P    ++ WLK  LS+ WS
Sbjct: 222 VSPIDHRQVRRGGRGVVVESQVPNFTAEIFWLKTQLSDHWS 262


>Z81579-1|CAB04655.1|  376|Caenorhabditis elegans Hypothetical
           protein R13H4.3 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 397 NAIAVSDSNNNDQNVIMWMDHRAYNEA--NAINKTNHTVLKYVGGKV 531
           NAIAVS+S  NDQ ++++  H     A  NA   +N  ++ Y    +
Sbjct: 266 NAIAVSES-RNDQRMLLYSSHDGVLLALLNAFRASNEMMVPYAAALI 311


>U42439-5|AAA83509.2|  542|Caenorhabditis elegans Hypothetical
           protein F19C7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 415 DSNNNDQNVIMWMDHRAYNEANAINKTNHTVLKYVGGKVSL 537
           D  +N  N+ +W  H  YN     NKT   V   +GG+ S+
Sbjct: 58  DHFSNGTNIGVWQQHYQYN-WKFYNKTTGYVFLMIGGESSI 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,044
Number of Sequences: 27780
Number of extensions: 279158
Number of successful extensions: 907
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)