Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21f12
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 487 NKTNHTVLKYVGGKVSLEMQMPKLLWLKNN 576
           N   H +L YVG + S+  ++  L W  +N
Sbjct: 788 NIITHMILNYVGSEDSVIPRILYLTWYSSN 817


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 196  RGHVHKTSVREILTWKPKYNFYEQSSENIWNR 291
            RG V + S+R   TW P+ + YE+ +    NR
Sbjct: 1669 RGTVIR-SIRSHSTWDPRRHMYEELNHCAPNR 1699


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 617 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTYLRT 504
           +++K P  ++F++  F   +    CI  L F P Y  T
Sbjct: 694 KTRKIP--ENFNESKFIGFTMYTTCIIWLAFVPIYFGT 729


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 617 RSKKCPYCDHFSDKLFFSHSNLGICISKLTFPPTYLRT 504
           +++K P  ++F++  F   +    CI  L F P Y  T
Sbjct: 784 KTRKIP--ENFNESKFIGFTMYTTCIIWLAFVPIYFGT 819


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 128 LIFASLESFGRTKNVSVQKCFTRF*ASTVLSRYYSRLEKFSF 3
           ++ ASL   G      +QK  T+F  + +L R++ R   +++
Sbjct: 6   VLLASLLYLGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAY 47


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 87  IFRSSKTFKTRKYE*CCLFCW 149
           +F+ +  FK   Y  C L CW
Sbjct: 90  VFKIAPIFKGIGYATCVLSCW 110


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 87  IFRSSKTFKTRKYE*CCLFCW 149
           +F+ +  FK   Y  C L CW
Sbjct: 143 VFKIAPIFKGIGYATCVLSCW 163


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 151 RQQNKQHYSYLRV-LKVLEERKMYRYKSALH 62
           +QQ +Q  S +R  LK L+ +  Y+YK A+H
Sbjct: 496 QQQEEQTQSRVRAHLKRLDHQP-YQYKIAVH 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,170
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)