Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21e21
(200 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 0.26
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 26 0.79
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 1.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 1.4
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 1.4
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 1.8
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 24 2.4
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 24 3.2
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 23 4.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 4.2
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 23 4.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 4.2
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 23 4.2
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 23 7.3
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 23 7.3
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 23 7.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 23 7.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 22 9.7
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 22 9.7
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 0.26
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 195 FLFKIK*K*NQPLKLSYLKEINAKIIINTHEMNQHKIYINLENIYHVEYKN 43
F F+I LKL+ +EIN II THE+ Q +I N + + +N
Sbjct: 58 FSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQLEIEPVTSNDWEIAERN 108
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 0.79
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 25 VIVYTYILIFNMVNIFKVYIDFMLVHLVSIYYYFCI 132
V+VYT I+ ++ + I+ +LVH+ YYY+ +
Sbjct: 154 VLVYTQIVGRTSISWLIIEIN-LLVHVTMYYYYYLV 188
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 117 INTHEMNQHKIYINLENIYHVEYKNISINYN 25
+NT + K NL NI++ EY N SI N
Sbjct: 1201 LNTSRGFETKYLYNLMNIWNPEYTNDSIKSN 1231
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 64 NIFKVYIDFMLVHLVSIYYYF 126
+IFK L HL+SIYY+F
Sbjct: 1394 DIFKSMYVLSLDHLLSIYYWF 1414
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +1
Query: 55 NMVNIFKVYID-FMLVHLV 108
N+VNIF +YID F +H+V
Sbjct: 95 NIVNIFDLYIDQFRCLHIV 113
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 22 LVIVYTYILIFNMVNIFKVYIDFMLVHLVSIYY 120
++ + Y+L+ + ++ Y F LV L+S++Y
Sbjct: 49 IIFSFLYLLLIVPLFLYPEYWAFKLVELLSLFY 81
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 25 VIVYTYILIFNMVNIFKVYIDFML 96
VI T+ +F+M+NIF+V++ +L
Sbjct: 88 VINQTWSPMFDMINIFEVFLPQLL 111
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +1
Query: 49 IFNMVNIFKVYIDFMLVHLVSIYYY 123
+ + N+F+ +I+ M H++ + YY
Sbjct: 122 VHDAANVFRRFINLMPEHVIPLEYY 146
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 10 LFLVLVIVYTYILIFNMVNIFKVYIDF 90
LF V+V + T IL +VNIF +DF
Sbjct: 26 LFTVIVALLTIIL--GIVNIFLPIVDF 50
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 138 EINAKII-INTHEMNQHKIYINLENIYHVEYKNI 40
+ NA II + E N+H I L +Y+V+ +NI
Sbjct: 1747 DTNADIITLFEKEANEHPSSIALHFVYNVDKENI 1780
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 10 LFLVLVIVYTYILIFNMVNIFKVYIDFMLVHLVSIYYYF 126
+FL+ IV+ + IF++ + F ++ LVS YF
Sbjct: 34 VFLLCAIVFPLVSIFSLPQKQTYHRFFSILSLVSCLAYF 72
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 9 SFFSAGYSLYLYSYIQHGKYFQGLYRFYVGSSREYLLLFLH 131
S FS+ SL+ + +F LY F + ++ LF H
Sbjct: 9 SLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSH 49
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 3 IISFFSAGYSLYLYSYIQHGKYFQ 74
I SFF A + ++ Y +IQ GK Q
Sbjct: 265 IASFFYALWQIWYYFFIQVGKQKQ 288
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 108 HEMNQHKIYINLENIYHVEYKNISIN 31
HE H+ ++L + Y ++KN++ N
Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAAN 138
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 33 LYLYSYIQHGKYFQGLYRFYVGSSREYL 116
+YLYS+ G + +G+ + V + E L
Sbjct: 47 IYLYSFFSSGVHTRGIQFYRVSAVMELL 74
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +1
Query: 64 NIFKVYIDFMLVHLVSIYYYFCI 132
++ VYI ++ LVS++Y++ +
Sbjct: 105 SLISVYIGIVISLLVSLFYFYSL 127
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = -3
Query: 102 MNQHKIYINLENIYHVEYKNISIN 31
+N H +Y L+ ++ + KNI+++
Sbjct: 1543 LNPHVVYTYLKYLWATDQKNIAVS 1566
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 22.2 bits (45), Expect = 9.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 141 KEINAKIIINTHEMNQHKIYIN--LENIYH-VEYKNI 40
K+ N ++ I + + +QHK+Y N +E++++ V Y I
Sbjct: 493 KKPNFEVAIISPKKSQHKLYPNPVVESVFNDVPYSEI 529
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 6 ISFFSAGYSLYLYSYIQHGKYFQGLYRFYVGSSRE 110
+SF + Y+YI+ K F L RF S +
Sbjct: 210 VSFLPNQSIVAAYNYIKDSKRFASLVRFDYSSKNQ 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,750
Number of Sequences: 5004
Number of extensions: 12055
Number of successful extensions: 42
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -