Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21e21
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586...    25   8.4  

>09_06_0349 +
           22457820-22457987,22458202-22458246,22458597-22458650,
           22458742-22458846,22458932-22459138,22459217-22459302,
           22459423-22460330,22460566-22460624
          Length = 543

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 163 TFKIIIFKGNQCKNNNKYSRDEPT 92
           +  + I  G++C  +N+YS++ PT
Sbjct: 414 SISVAIEDGSECLEDNQYSKEYPT 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,316
Number of Sequences: 37544
Number of extensions: 49247
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)