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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21e21
         (200 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.11 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   0.35 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   0.35 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   0.35 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   0.60 
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   0.60 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   1.1  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   1.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   1.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   1.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   1.4  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   1.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    20   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   2.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   3.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   3.2  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              19   4.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   5.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    19   5.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   7.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   7.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               18   9.8  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.11
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYNQH*KK 10
           KII +     ++  Y N  N Y+  Y N + NYN + KK
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYN-NYNNYNNNYNNNYKK 350


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 0.35
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYNQH*KK 10
           KII +     ++  Y N  N Y+  Y N   NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNN---NYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 0.35
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYNQH*KK 10
           KII +     ++  Y N  N Y+  Y N   NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNN---NYNNNYKK 115


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 0.35
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIYHVE-YKNISINYNQH*KK 10
           KI  +L N Y+   Y N + NYN + KK
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNYNNYNKK 107


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 0.60
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 90  KIYINLENIY-HVEYKNISINYNQH*KK 10
           KI  +L N Y +  Y N + NYN + KK
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKK 107



 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 126 KIIINTHEMNQHKIYINLENIYHVEYKNISINYN 25
           KII +     ++  Y N  N Y+  YK +   YN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNTNYKKLQY-YN 112


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 138 EINAKIIINTHEMNQ--HKIYINLENIYHVEYKNISI 34
           E+  + ++N  +  Q     Y NL   YH +Y N  I
Sbjct: 698 EVLPENLVNAQQQVQAVRNYYANLYTKYHGQYPNTQI 734


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 87  SLSNNYN--YNNNYNNYNKHNYNKLY 110


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 320 SLSNNYN--YNNNYNNYNKHNYNKLY 343


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  NLENIYHVEYKNISINYNQH*KKKLF 1
           +L N Y+  Y N   NYN+H   KL+
Sbjct: 320 SLSNNYN--YNNNYNNYNKHNYNKLY 343


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 75  LENIYHVEYKNISINYNQH*KKKLF 1
           L N Y+  Y N   NYN+H   KL+
Sbjct: 88  LSNNYN--YNNNYNNYNKHNYNKLY 110


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 63  YHVEYKNISINYNQH*KK 10
           Y+  Y N + NYN + KK
Sbjct: 94  YNNNYNNYNNNYNTNYKK 111


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 108 HEMNQHKIYINLENI 64
           H ++ HK ++ +EN+
Sbjct: 554 HNLSLHKCFMRVENV 568


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 102 MNQHKIYINLENIYHVE 52
           M + KI+IN+  I HV+
Sbjct: 1   MGKEKIHINIVVIGHVD 17


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 10  LFLVLVIVYTYILIF 54
           LF++ +I+Y  IL+F
Sbjct: 373 LFMLFIILYWPILLF 387


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 102 MNQHKIYINLENIYHVE 52
           M + KI+IN+  I HV+
Sbjct: 1   MGKEKIHINIVVIGHVD 17


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 129 AKIIINTHEMNQ 94
           AKI +N +E+NQ
Sbjct: 88  AKIFLNENEINQ 99


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 33  LYL-YSYIQHGKYFQGLYRFYVGS 101
           LYL Y+   H   F G Y   +GS
Sbjct: 362 LYLTYNGTVHDVEFPGXYTMVIGS 385


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -2

Query: 157 KIIIFKGNQCKNNNKYSRDEPT*NLYKP*KYL 62
           KII    N C  +N Y  +     LY    Y+
Sbjct: 302 KIISSLSNSCNYSNNYYNNNNYKKLYYNINYI 333


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/29 (20%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  LVLVIVYTYILIFNMVNIFKVYIDFMLVH 102
           LVL ++  Y+L   ++N   + +  ++++
Sbjct: 291 LVLPLIAKYLLFTFIMNTVSILVTVIIIN 319


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 159 LKLSYLKEINAKIIINTHE 103
           LKL   K IN  II+N ++
Sbjct: 127 LKLMKKKGINNGIIVNIND 145


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -3

Query: 123 IIINTHEMNQHKIYI 79
           I + TH+  +HK+ +
Sbjct: 228 ISLTTHQQKRHKLRV 242


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 67  IFKVYIDFMLVHLVSIYYYF 126
           +FK Y  F ++ +  I+ YF
Sbjct: 1   MFKNYHFFFILVITLIFLYF 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,701
Number of Sequences: 438
Number of extensions: 990
Number of successful extensions: 42
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2659293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)

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