Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21e18
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 51 9e-07
04_03_0649 - 18402976-18403220,18403305-18404499 40 0.001
10_08_0009 + 14075929-14076789 33 0.20
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 32 0.47
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 30 1.9
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 3.3
12_02_1279 + 27510605-27513301 29 4.4
12_02_0431 - 19000267-19000719 29 4.4
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 29 4.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +2
Query: 89 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 256
+S+K+ G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 257 IDLAWQFP 280
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 197 ARTAFINSGVLLAEQYGFDGIDLAWQFP 280
+R AFI + V +A + GFDG+D+AW+FP
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFP 170
>10_08_0009 + 14075929-14076789
Length = 286
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 83 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 250
A+ + KA +P L+V+L++GGD T + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 251 DGIDLAWQ 274
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 31.9 bits (69), Expect = 0.47
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +2
Query: 140 GDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGS 319
G + TE Y A +I SG ++ Q G D + W+ + + + W
Sbjct: 431 GGSPTELITSYTESTGRPPALPRWITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQ 490
Query: 320 LWHGIKKTFGTTPV---DEKESEHREGFTALVRELKQ 421
W G +KT + + E + +H G+ LVR+L++
Sbjct: 491 DWVGQRKTSIGSQLWWNWEVDDDHYAGWNDLVRDLRR 527
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 540 APTFT*STKLMMAGTSW*IVELTLGKTVTPSCILGLWIRACFNSRTR 400
AP S+ L W IV + V C+L LWIR C R R
Sbjct: 91 APQKDSSSGLSSTAVVWIIVAAGVVGAVLALCVLTLWIRRCRRQRRR 137
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -3
Query: 370 LLIDWRGAECLLNSMPKRSPGRA---DLLRLNSWELPGEVNSIETILFSQQHSGINE 209
LL D R + L++ KR+ G D+ RLNSW L V S+ + Q+ S ++E
Sbjct: 1503 LLPDLRSKQLLVHFFLKRTVGNLSDDDVARLNSWALGLRVLSLLPLPSQQRCSSLHE 1559
>12_02_1279 + 27510605-27513301
Length = 898
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 475 NVGQNSHAELHLRLVDK-GLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMPKRSPGRAD 299
N Q+S+A +H + GL+ G +T LRF D G CLL S GR
Sbjct: 229 NSVQDSNAAVHSMTANSSGLYLLAANGRDTVFRLRFPSPDANGDPCLLK---LDSSGRLR 285
Query: 298 LLRLNS 281
LRL++
Sbjct: 286 ALRLST 291
>12_02_0431 - 19000267-19000719
Length = 150
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 572 CCCVSECNNRKRQR 531
CCCVS C R+R+R
Sbjct: 96 CCCVSACGGRRRRR 109
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 550 LHSDTQQQRS*LHSSYLHPTKSQPTAERRRRCHILA 657
LHS+ ++R L+SS HP S P + R H LA
Sbjct: 88 LHSEPSRRRLLLYSSSGHPIASSPWPPQLPRLHSLA 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,747,048
Number of Sequences: 37544
Number of extensions: 384579
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -