Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21e13
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...   186   4e-48
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    31   0.16 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.48 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   0.84 
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    26   4.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   5.9  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   7.9  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score =  186 bits (452), Expect = 4e-48
 Identities = 81/159 (50%), Positives = 117/159 (73%)
 Frame = +1

Query: 214 LLDFNQKLDINLLDNIVGCLYSAVGDQQRVAQDILTALKEHPDAWTRVDTILEYSQNQET 393
           +L F+++LD+ LLD +V   Y  VG +Q+ AQ +LT  + HPDAW++  +ILE S+  +T
Sbjct: 4   ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63

Query: 394 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 573
           KY AL +L+++I TRWK+LP+ Q  GI+ YIV ++IKNSSD   ++  K +L KL++ L+
Sbjct: 64  KYIALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLNKLDLTLV 123

Query: 574 QVLKREWPHNWETFISDIVGASKTNESLCQNNMEIFKLL 690
           Q+LK+EWPHNW  FI +IV ASKTN SLC+NNM + +LL
Sbjct: 124 QILKQEWPHNWPNFIPEIVQASKTNLSLCENNMIVLRLL 162


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/71 (18%), Positives = 35/71 (49%)
 Frame = +1

Query: 394 KYYALQILEQVILTRWKILPRNQCEGIKKYIVGLIIKNSSDPVTMESNKVYLKKLNMILI 573
           ++++L + E  +   WK     + E +  ++  + +++++    + S      KL  + I
Sbjct: 70  QHFSLSLFETSVGMNWKSFSNKEKESVTSFLCKISLEDNN----LLSVHFVRSKLASVFI 125

Query: 574 QVLKREWPHNW 606
           ++ KR+W + W
Sbjct: 126 EIAKRDWYNTW 136


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 110  MWINQNNFDFG--KKGTN*LNKYILPEW 187
            M+IN N FDFG  +K +  +N  ILP W
Sbjct: 2081 MFINGNGFDFGSRQKESTPINDVILPPW 2108


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -2

Query: 337 DVPSKQSVYPEQHVVDPQQQN 275
           DV +K S + E+H++DP+++N
Sbjct: 603 DVNTKDSSFAERHIIDPEKRN 623


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 399 IFSFLILRIFKYCINTSPSIRMFLQSSQYILSNTLLIP 286
           I SF++L +F+  +    S  +FL +   ++S  LLIP
Sbjct: 505 IISFILLAVFRPFVGFKNSFCVFLVALTRVVSFALLIP 542


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +1

Query: 334 HPDAWTRVDTILEYSQNQETKYYALQILEQVILTR--WKILPRNQCEGIKKYIVGLIIKN 507
           H D + +  T+L  S+N  TK  +L++L +++L R    ++ R         ++ +++++
Sbjct: 202 HFDEFFKQYTVLLKSENYVTKRQSLKLLGEILLNRANRSVMTRYISSAENLKLMMILLRD 261

Query: 508 SSDPVTMESNKVY 546
            S  +  E+  V+
Sbjct: 262 KSKNIQFEAFHVF 274


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 396 ILCITNIRTSNTNEMENITKKSV*GYKKIY 485
           ILCI+N R   T   E + K+    YKK++
Sbjct: 788 ILCISNGRIVETGTHEELIKRDGGAYKKMW 817


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 136 FWKKGNKLTK*IYFTRMATLEQQASKLLDFNQ 231
           FW+KG++  + +   + A L QQ    L F+Q
Sbjct: 277 FWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQ 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,772
Number of Sequences: 5004
Number of extensions: 60392
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)