Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21e11
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   178   3e-46
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   178   3e-46
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   6.4  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   8.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  178 bits (434), Expect = 3e-46
 Identities = 78/111 (70%), Positives = 95/111 (85%)
 Frame = +1

Query: 100 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 279
           R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+IRR+YLH
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLH 89

Query: 280 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 432
           ++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 90  FIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +3

Query: 3   LSSKMADQTEKAFQKQATVFPEQE-----RWHEEEG 95
           +++++  Q+E+AFQKQ  +F   +     RW+++ G
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGRRWYKDVG 36


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  178 bits (434), Expect = 3e-46
 Identities = 78/111 (70%), Positives = 95/111 (85%)
 Frame = +1

Query: 100 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 279
           R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+IRR+YLH
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIIIRREYLH 89

Query: 280 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 432
           ++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 90  FIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +3

Query: 3   LSSKMADQTEKAFQKQATVFPEQE-----RWHEEEG 95
           +++++  Q+E+AFQKQ  +F   +     RW+++ G
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGRRWYKDVG 36


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 220 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 399
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 400 SKTVRFNVLKV 432
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 157 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 59
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 355 VEIGDIVTIGECRPLSKTVRFNVL 426
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 100 ACPSSSCHLSCSGKTVACF*NA 35
           +C S SC +SC  +   CF +A
Sbjct: 437 SCHSDSCKVSCQNEDGTCFISA 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,055
Number of Sequences: 5004
Number of extensions: 36235
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)