Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21e11
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   186   8e-48
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.82 
Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine rece...    27   7.6  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  186 bits (453), Expect = 8e-48
 Identities = 83/115 (72%), Positives = 96/115 (83%)
 Frame = +1

Query: 88  RKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 267
           +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RR
Sbjct: 28  KKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRR 87

Query: 268 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 432
           DYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 88  DYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 426 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 322
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 114 ILMVTHVLPLHATFPVQEKRWPVSETLSLSD 22
           I  +T  LP+ A  P+QE   P  E L L +
Sbjct: 137 IFPLTFTLPIWAVMPIQENARPCDEALQLEN 167


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 228 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 347
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>U97008-2|AAB52309.1|  336|Caenorhabditis elegans Serpentine
           receptor, class h protein244 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 134 VLKPKPTFLW*RMSFLFMPPFLF---RKNGGLFLKRFLCLIRHFA 9
           V KP   F++  + F+F+PPFL    ++N   F+   L  + HF+
Sbjct: 135 VRKPYLIFVYISVPFIFLPPFLIIPEQENARSFILDKLPCLPHFS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,948
Number of Sequences: 27780
Number of extensions: 210525
Number of successful extensions: 511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)