Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21e04
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 87 3e-18
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc... 82 6e-17
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 31 0.11
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 29 0.45
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 4.2
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 26 5.6
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 5.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.4
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 9.7
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 9.7
>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 86.6 bits (205), Expect = 3e-18
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = +3
Query: 45 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 221
AP +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 8 APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66
>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 82.2 bits (194), Expect = 6e-17
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +3
Query: 57 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLR 221
V KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLR
Sbjct: 4 VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLR 58
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +1
Query: 475 ILFCWITMWGTYGVVFKLDTSLWQVRIMFSIQI--FYVIHRLYLYE 606
+LFC+++ + G++ +L ++ W +R +FSI I FY+I +LY+
Sbjct: 25 LLFCFLSAYPFAGILKRLPSAPW-IRNLFSISIGLFYLIGVHHLYD 69
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 69 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 194
++KK I+ ++L SGKYC G T+ L++G + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 45 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 218
APK + KK KT++ + + ++ G K+ +K +R+G+ LVI+A + P+
Sbjct: 33 APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82
>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 457 NCIRFLILFCWITMWGTYGVVFKLDTSLWQV 549
N + F+I+F +T W ++ KL SLW++
Sbjct: 50 NTVVFIIVF--LTGWAAKSIIVKLLPSLWRL 78
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 163 LFDKAKQSWLSSLKMLLR*GEATEK*SFPILV--KGMHMESY*QRSMDSLCGLVKQFAK 333
+FD +++S L+S+K R K + PIL+ K H ++ + + + +++AK
Sbjct: 89 MFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAK 147
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 643 TTVNNFIQLHLLIHINTTYG 584
T V+ I+LHL H N TYG
Sbjct: 548 TLVSLLIRLHLDFHTNNTYG 567
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 616 HLLIHINTTYGLH 578
HLL++++ TYGLH
Sbjct: 2483 HLLVYLSKTYGLH 2495
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 68 LCCNHFGSVNANESSPRAQMEK 3
+ C+H S+NAN S+ RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 191 YHR*KCSSAKVRLLRSRVSQYLSKGCIWSLTDKEVWIPFVV**NSSQK*G 340
Y CSS ++L S +S+ L + +W K V+ SSQ G
Sbjct: 507 YRMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMNSAVLRRQSSQSSG 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,145
Number of Sequences: 5004
Number of extensions: 56247
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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