Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21e03
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.0
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 28 1.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.3
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.1
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 26 4.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 4.1
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 5.4
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 26 5.4
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 26 5.4
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 7.1
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.4
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 9.4
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 25 9.4
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 9.4
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -1
Query: 317 DPASSTPTPTSLMLCCLRIGAISLNSLAQSLQNMQPQRRKNTIATFCCSQKLFNSKTS 144
D + P P + C L N L N++ RR N +A + S +F K S
Sbjct: 778 DASYDNPDPQHKVSCTLECSQQQRNKLFAEALNIKTDRRSNDVAQYTKSLLVFYGKHS 835
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 356 RSPSKNFPSLNSLDPASSTPTPTSLMLCC--LRIGAISLNSLAQSLQNMQPQRRKNTIAT 183
+ PS+ P +D +++ T +L+LC L ++ S Q L N+ +KNT+
Sbjct: 732 KPPSQTEPDNKKVDVSTTLSTNDNLVLCWRDLNFTVVTKTSKKQILTNVSGYLKKNTLTA 791
Query: 182 FCCSQK 165
K
Sbjct: 792 LLGENK 797
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/91 (21%), Positives = 42/91 (46%)
Frame = +1
Query: 217 MFCRLWAKELSEIAPILKQHNIKLVGVGVEEAGSKEFSEGKFFDGDLYYVENISTYQQLG 396
+F W K E + + + +G G++E +E+ + D ++ENI+
Sbjct: 92 LFDTEWIKNFHEGSHDKAEKRLVSIGKGLKEFLPEEWLLSRL---DCKFLENINVVPNGD 148
Query: 397 FKRFNVLTILTSLLWKQSRDAISKGKAMGLS 489
F ++ TSLL++Q + + + ++ G S
Sbjct: 149 FLNRKIVRTNTSLLYRQKKFNLLREESEGFS 179
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 380 VEMFST*YRSPSKNFPSLNSLDPASSTPTPTSLMLCCLRIGAISLNSLAQSLQNMQ 213
VE T + SL D + TP P+ L L+ GA S +QSL+NM+
Sbjct: 221 VEKLKTSASKQAAEAQSLREFDFFTPTPEPSDKNLEKLKNGASKQASESQSLKNME 276
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 257 AISLNSLAQSLQNMQPQRRKNTIATFCCSQKLFNSKTSPLET-FLTFCVP 111
A +L+S + N RR A+ CC QKL K L T FLT +P
Sbjct: 166 ARALSSALDIIPNKNSSRRLQ-FASLCCVQKLICPKQYRLPTEFLTTFLP 214
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 562 HFVQTGPADHLSNLEILKQFGLENE 636
HF++ P DH++ + L+ +G NE
Sbjct: 155 HFLEQEPIDHINFTKFLQDWGSHNE 179
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 467 FEMASRDCFHSSEVKIVKTLNLLKPNC 387
+E++ D F EVK+ T N L P C
Sbjct: 124 YEISLEDMFKGKEVKLRATRNTLCPRC 150
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 356 RSPSKNFPSLNSLDPASSTPTPTSLMLCCLRIGAISLNSLAQSLQNMQPQRRKNTI 189
++P K+ SLN + P+SSTPTP S++ S +S+ + +KN +
Sbjct: 606 KTPEKD-RSLN-VTPSSSTPTPASVLAPPSSASLSSSKDANRSVPESPRREKKNRV 659
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 544 PFLPERRHPLEPNLPSCRHLSPWLFLSKWRHV 449
P +PER+ +P P PW + WRH+
Sbjct: 33 PSVPERKW--DPKAPKHIQEQPWTMQNWWRHL 62
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = -1
Query: 578 PVCTKWRSKFPPFSTRAAPPT*TQSPFMSPLKPMAFPFEMASRDCFHSSEVKIVKTLNLL 399
PV T + FP + + ++P +P++ A+P M+ RD S KTL+
Sbjct: 120 PVTTFEEAGFPNYVLKEVKQLGFEAP--TPIQQQAWPMAMSGRDMVGISATGSGKTLSYC 177
Query: 398 KP 393
P
Sbjct: 178 LP 179
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 387 LVS*NVLDVIQISIEKLSFAELLGSGLFDANPDKFDVVLLE 265
LVS + V+ + L +++ G L+D +KFD+ LLE
Sbjct: 183 LVSNFLASVLLQTEAPLDISDVCGMNLWDIQNEKFDIRLLE 223
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 175 QQNVAIVFFRRWGCMFCRLWAKELSEIAPILKQHNIKLVG 294
++ I F+ W C C+ A E+ + + HN L+G
Sbjct: 39 KKGALIEFYATW-CGHCKSLAPVYEELGALFEDHNDVLIG 77
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 205 RWGCMFCRLWAKELSEIAP 261
R+GC+ CR K+ E+ P
Sbjct: 18 RYGCLICRSMRKKCDEVHP 36
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 150 NFATGNVSHFLRTDLINIRRHFKF*FAFVIY 58
N TG V+HF+ ++ KF +AF +Y
Sbjct: 219 NVNTGTVTHFVALAPFKNSKNEKFSYAFTLY 249
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 61 NHKSELKLKMSPDINQIGTQKVRNVSSGEVLEL 159
NHK+ LKM+ N++ T + ++S E +E+
Sbjct: 662 NHKNNHPLKMTDLSNEVETMALEDMSEREEVEV 694
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = +1
Query: 283 KLVGVGVEEAGSKEFSEGKFFDGDLYYVENISTYQQLGFKRFNVLTILTSLLWKQSRDAI 462
KL + V + K G FDG + ++NI LG +TIL+ + +++ D +
Sbjct: 355 KLFALAVRQISHKTKRPG--FDGIINSLKNIFEEDNLGKTSLKCVTILSRMFKQRNYDVL 412
Query: 463 SKGKAMGLSGDMKGD 507
+ LS ++ D
Sbjct: 413 PDVYDLFLSVNILND 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,910
Number of Sequences: 5004
Number of extensions: 60301
Number of successful extensions: 228
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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