Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21e03
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 46 3e-05
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949... 33 0.15
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 33 0.20
10_08_0974 + 21969713-21971914 33 0.26
11_05_0091 - 18982390-18982948,18983088-18983173 31 0.79
04_03_0879 + 20508414-20510051 29 3.2
09_04_0524 + 18321110-18323978,18324098-18324576 29 4.2
08_02_1110 + 24371934-24374763,24375034-24375518 29 4.2
03_02_0153 - 5961910-5962441,5962779-5963128,5963415-5963681,596... 29 4.2
12_02_1243 + 27300978-27301682 28 7.4
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 28 7.4
03_05_0612 + 26117306-26118045,26118151-26118680,26119247-261192... 28 7.4
10_08_0063 + 14588177-14589343 27 9.7
02_03_0149 - 15744153-15744157,15744254-15744380,15744600-157447... 27 9.7
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Frame = +1
Query: 139 SGEVLELKSFWEQQNVAIVFFRRWGCMFCRLWAKELSEIAPILKQHNIKLVGVG---VEE 309
SG+ + + W+ + + F R +GC+ CR A L+ ++ + LV +G VE+
Sbjct: 83 SGKAVPVVDLWKDRKAIVAFARHFGCVLCRKRADLLAAKQDAMEAAGVALVLIGPGTVEQ 142
Query: 310 AGSKEFSEGKFFDGDLYYVENISTYQQLGFKRFNVLTILTSLLWKQS 450
A K F + F G++Y + S+Y L F F + + T L+ Q+
Sbjct: 143 A--KAFYDQTKFKGEVYADPSHSSYNALEF-AFGLFSTFTPSLYPQA 186
>03_05_1002 -
29594462-29594581,29594686-29594781,29594857-29594916,
29595574-29595618,29595956-29596070,29596200-29596246,
29596529-29596822
Length = 258
Score = 33.5 bits (73), Expect = 0.15
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 10/171 (5%)
Frame = +1
Query: 109 IGTQKVRNVSSGEVLELKSFWEQ-QNVAIV-FFRRWGCMFCRLWAKELSEIAPILKQHNI 282
+G + + ++GE + + W+Q + +A+V R +GC C A L + +
Sbjct: 74 LGGVAIYSAATGEPVLFRDLWDQNEGMAVVALLRHFGCPCCWELASVLRDTKERFDSAGV 133
Query: 283 KLVGVGVEEAG-SKEFSEGKFFDGDLYYVEN-------ISTYQQLGFKRFNVLTILTSLL 438
KL+ VGV ++ +E F D Y + + Y +G FN +
Sbjct: 134 KLIAVGVGTPDKARILAERLPFPLDYLYADPERKAYDLLGLYFGIGRTFFNPASASVFSR 193
Query: 439 WKQSRDAISKGKAMGLSGDMKGDWVQVGGAALVEKGGNLLRHFVQTGPADH 591
+ ++A+ K + + D + +Q GG V +G L+ G DH
Sbjct: 194 FDSLKEAV-KNYTIEATPDDRASVLQQGG-MFVFRGKELIYARKDEGTGDH 242
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 46 KNFLINHKSELKLKMSPDINQIGTQK-VRNVSSGEVLELKSFWEQQNVAIVFF 201
K+ L N K ++L S ++ Q+G K + + +V+ ++FW+ N+A+ +F
Sbjct: 427 KSLLDNKKELVRLFKSDEMEQLGYLKQAKGKKASKVIRSETFWKNVNIAVNYF 479
>10_08_0974 + 21969713-21971914
Length = 733
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 563 WRSKFPPFSTRAAPPT*TQSPFMSPLKPMAFPFEMASRD 447
W S F P T AAPP + SPF+S L+ ++ A D
Sbjct: 76 WVSSFRPQPTAAAPPPPSLSPFLSRLELWVLAYQKAYAD 114
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 31.1 bits (67), Expect = 0.79
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 356 RSPSKNFPSLNSLDPASS-TPTPTSLMLCCLRIGAISLNSLAQSLQNMQPQRRKNT 192
RSPS P SL P+ S +PTP S CCL G ++ NS S P +R+ T
Sbjct: 121 RSPSSRSPL--SLQPSPSPSPTPDSATPCCL-TGRLADNSTLNSDTPGTPAQRRLT 173
>04_03_0879 + 20508414-20510051
Length = 545
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/89 (32%), Positives = 42/89 (47%)
Frame = -1
Query: 335 PSLNSLDPASSTPTPTSLMLCCLRIGAISLNSLAQSLQNMQPQRRKNTIATFCCSQKLFN 156
P L + ASS PT SL +R+G + + +L +Q R A ++ LF+
Sbjct: 110 PLLCACARASSLPTGASLHAAAIRLGVDADLFVRTAL--IQFYGRCGAAAA---ARALFD 164
Query: 155 SKTSPLETFLTFCVPI*LISGDILSFSSL 69
S T+P E T V + SGDIL+ L
Sbjct: 165 SLTNPSEVSWTAIVTAYVNSGDILTAREL 193
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 526 RHPLEPNLPSCRHLSPWL 473
RHPL+P LP HL W+
Sbjct: 984 RHPLDPTLPGGAHLVQWV 1001
>08_02_1110 + 24371934-24374763,24375034-24375518
Length = 1104
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 526 RHPLEPNLPSCRHLSPWL 473
RHPL+P LP HL W+
Sbjct: 971 RHPLDPTLPGGTHLVQWV 988
>03_02_0153 -
5961910-5962441,5962779-5963128,5963415-5963681,
5964149-5964379
Length = 459
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 229 LWAKELSEIAPILKQHNIKLVGVGVEEAGSKEFSE 333
+W+K E+ +L ++ KLVG+ V+ GS E S+
Sbjct: 221 VWSKGYRELLDLLSKYQSKLVGLEVDLYGSGEDSD 255
>12_02_1243 + 27300978-27301682
Length = 234
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 520 PLEPNLPSCRHLSPWLFLSKWRHV 449
P EP + C HL W L KW H+
Sbjct: 32 PQEPIVTLCGHLFCWPCLYKWLHI 55
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 263 FSSSTTSNLSGLASKRPDPRSSAKESFS 346
F S T++ SGL S +PDP SS + S
Sbjct: 749 FVPSLTADTSGLQSSQPDPNSSLMNNSS 776
>03_05_0612 +
26117306-26118045,26118151-26118680,26119247-26119278,
26119910-26121175
Length = 855
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 436 LWKQSRDAISKGKAMGLSGDMKGDW 510
LW Q R I +G+A G DM+ DW
Sbjct: 199 LW-QERSFIRQGQAAGTIADMRSDW 222
>10_08_0063 + 14588177-14589343
Length = 388
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 266 SSSTTSNLSGLASKRPDPRSSAKESFSMEICITSRTFQL-TNSWVLK 403
SSS+ +SG + D S KE S C S TF++ T+SW L+
Sbjct: 18 SSSSAIVVSGCHVLKIDGYSHTKEMLSQGDCSRSCTFRVGTHSWYLE 64
>02_03_0149 -
15744153-15744157,15744254-15744380,15744600-15744713,
15744949-15745014,15745106-15745208,15746263-15746318,
15746531-15746756,15746872-15747008
Length = 277
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 286 LVGVGVEEAGSKEFSEGKFFDGDLYYVENISTYQQLGFKRFNVLTILTSLLW 441
+ G G+ EA + GK F+G + N+ Y+ G + + V I LW
Sbjct: 88 IFGFGLFEAALQLLLPGKRFEGPVSPSGNVPVYKANGLQAYAVTLITYLSLW 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,699,617
Number of Sequences: 37544
Number of extensions: 404923
Number of successful extensions: 1137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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