Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21d18
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    29   0.73 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    29   0.73 
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    25   6.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 143 LIYRLY*FIVVFYSDGSFTIVKNVYTNIKNTIYRFC*KA-QYFYYLTIYFQGLFI 304
           +++  +  IV+ Y    F +  N     +  I RFC +   +FYYL  +F GL+I
Sbjct: 123 IVFTAFRVIVMDYVFRPFVL--NWGVRNRKVIIRFCEQGYSFFYYLCFWFLGLYI 175


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 471 IKIVDLHVMFHELTQFAHPSTDGANIKNAFTF 376
           I ++   +  H+L + +H +TD A I NA TF
Sbjct: 314 INVLGTFIGNHDLPRISHNNTDQARIMNAITF 345


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 456 LHVMFHELTQFAHPSTDGANIKNAFTFYVKP 364
           L ++  E  +F  PSTD A + N F   ++P
Sbjct: 242 LILLMSERDEFVSPSTDKAQLLNRFRESIRP 272


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 295 TLKINRQIIKILGFSTKAIYCIFNICVHIFNDCKTTVRIKNN-YKLVQSVYKALTIVYKN 119
           +L I  ++ K    S K IYC+F   +  FN       + NN +    S    LT  Y N
Sbjct: 112 SLTIKYELEKKEEASLKVIYCLFCNKLEFFNADMNAASVLNNLFPPASSRNAQLTASYIN 171

Query: 118 S-ICKMQVNIY 89
             + ++  +IY
Sbjct: 172 ELLLELSFSIY 182


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 199 CKTTVRIKNNYKLVQSVYKALTIVYKNSICK 107
           C T    + N K+   +++ ++IVY N I K
Sbjct: 626 CVTDEGKEKNIKIAVEIFREISIVYPNPITK 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,798
Number of Sequences: 5004
Number of extensions: 46075
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)