Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21d09
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 29 0.67
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 2.7
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 6.2
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 26 6.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 8.2
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 8.2
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 8.2
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 25 8.2
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.67
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 13/77 (16%)
Frame = +1
Query: 520 LGIAYYNNLINEILKYNITPMITIYHWD-LPQKLQ----------DIGGWSNAHIVD--Y 660
LG+A LI+ Y+ T + T+Y W+ + + L+ D GW H+ D Y
Sbjct: 10 LGLASLLGLISSATAYSATDLTTMYDWNQIIKPLEWGQLNFIHTTDTHGWLGGHLRDARY 69
Query: 661 YTDYAKILFKNFGDRVK 711
D+ + FK+F R+K
Sbjct: 70 KADFGE--FKSFALRMK 84
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 403 YHLYKRDAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNL 546
Y+LY + + V+ LG D +++S PTG ++L Y N+L
Sbjct: 149 YYLYNTETKDVNMLGQDNEHWTISLAEWSPTG-----HQLSFVYNNDL 191
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +1
Query: 412 YKRDAEMVHELGVDTYRFSVSW 477
Y+R+++ +++L +DT+ V W
Sbjct: 654 YRRESQKIYKLSIDTFGEEVPW 675
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Frame = +1
Query: 301 WNVDGKSESIWDHL----VHKNPEFVKDGSNADVASDSYHLYKRD-AEMVHELGVDTYRF 465
WN+D E++WD+L V+ P ++ + V + H D +H ++
Sbjct: 275 WNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVILRTGHSTVEDFCNNIHSSIKSQFKH 334
Query: 466 SVSWPRILP 492
+ W + +P
Sbjct: 335 AYVWGKSVP 343
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.2
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +1
Query: 583 ITIYHWDLPQKLQDIGGWSNAHIVDYYT 666
+T W +P+ +Q +GG ++++Y++
Sbjct: 11 LTSIQWRMPEWVQSMGGLRTENVLEYFS 38
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 514 NELGIAYYNNLINEILK 564
N+L IAYY N I+ +L+
Sbjct: 399 NQLSIAYYENFISRVLE 415
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 547 INEILKYNITPMITIYHWDLPQKLQDIGGWSNAHIVDYYTDYAKI 681
I+EI Y+ + +Y WD+ + I W + + +YA+I
Sbjct: 315 IDEIDSYDDAELNPLYSWDVTESNHSINIWFDFFTLGDGANYAEI 359
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 221 EEKIRTTSFQKISYLEYLQLL 283
EE I ++ Q ISYLEYL+ L
Sbjct: 144 EEYINLSNVQHISYLEYLKNL 164
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 229 NTNYKFPENFIFGVSTAAAQIEGAWNVDGKSE-SIWDHLVHKNPEFVKDGSNADVASDSY 405
N+N+ +P + G+S+ + I W+ + + E ++ L+ + P D V +
Sbjct: 2 NSNFSYPALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPL 61
Query: 406 HLYKRDAEMVHELGVDTYRFSVSWPRILPTGL 501
++K + ++ T R +V +I+ GL
Sbjct: 62 GVFKSSDDYHYQ----TLRANVDSLKIIQIGL 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,742
Number of Sequences: 5004
Number of extensions: 68777
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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