Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21d08
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    29   0.48 
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   1.9  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.9  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   5.9  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   5.9  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   7.9  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
 Frame = +3

Query: 171 TFSSAHRLHSPFLSDEENKKVYGKCNNPNGHG---HNYVVLVTVKGPVDPQTGMVMNITD 341
           +F ++ R+  P +S++  +++YG  N          N +  VT+    D        +T 
Sbjct: 42  SFMTSSRMDKPSMSNKPREQMYGLGNMTAVQEPIPENSLKTVTL----DQAQTAASTVTG 97

Query: 342 LKK-YIKTAILEPLDHKNLDNDVPYFKTM-ASTTENVAIYVWDQLQRIMEKPQLLHEVKI 515
           L   Y+      PLD++ LD+ +P+F  +  +       Y W+  + +    Q +    +
Sbjct: 98  LHPIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEI--ASV 155

Query: 516 LETEKNHVVYRGGNTYS 566
           +  +   +++  G T S
Sbjct: 156 INADPREIIFTSGATES 172


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
 Frame = +3

Query: 36  DIIS--IKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFL 209
           DII+  +  QNS    K   +     S  L  + ++SLP + +   +  S A  +    L
Sbjct: 65  DIIAPQLPSQNSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETV---VL 121

Query: 210 SDEENKK--VYGKCNNPNGHGHNYVV--LVTVKGPVDPQTGMVMNITDLKKYIKTAILEP 377
           +++E K+  + G  +     G +  +   + V   V+PQ     NIT +   +K +  E 
Sbjct: 122 NEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMENTANITIVSPSLKESDFES 181

Query: 378 LDHKNLDND 404
            +    DN+
Sbjct: 182 EEKATNDNN 190


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 387 KNLDNDVPYFKTMASTTENVAIYV-WDQLQRIMEKPQLLHEVK 512
           +NLD + P F+       NV +++ +DQ   IM +P LLH++K
Sbjct: 512 ENLDAEDPLFRA------NVHLHMTYDQAIIIMSRPVLLHKMK 548


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 117 LLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNY 275
           L+NY  +  P  S  RRET    +  HS   S +E    Y    + +    +Y
Sbjct: 129 LMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSY 181


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 501 HEVKILETEKNHVVYRGGNTY 563
           HE ++   +K H  YRGG +Y
Sbjct: 305 HEAELRNNDKFHYRYRGGESY 325


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 312 QTGMVMNITDLKKYIKTAILEPLDHKNLDND 404
           Q G +    DL  +I   +    +HK LDND
Sbjct: 89  QQGQIETKPDLTLFINELLTTKKEHKKLDND 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,456
Number of Sequences: 5004
Number of extensions: 57145
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)