Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21d04
(129 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 88 2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 9e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 3e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 0.45
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 0.45
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 0.60
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 1.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 1.4
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 25 1.4
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 1.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 1.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 1.8
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 24 2.4
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 24 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 2.4
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 23 4.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 5.6
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 23 7.3
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 23 7.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 23 7.3
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 23 7.3
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 22 9.7
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 22 9.7
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 22 9.7
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 22 9.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 22 9.7
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 22 9.7
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 22 9.7
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 22 9.7
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 22 9.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 22 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 87.8 bits (208), Expect = 2e-19
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = +1
Query: 1 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 126
VLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDL
Sbjct: 139 VLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 60.9 bits (141), Expect = 2e-11
Identities = 25/37 (67%), Positives = 34/37 (91%)
Frame = +1
Query: 1 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 111
VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.8 bits (136), Expect = 9e-11
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +1
Query: 1 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 126
VLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+
Sbjct: 139 VLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV 180
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.3 bits (90), Expect = 3e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 31 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 126
TG V+DSGDGV+H +P+ EGY + +I + L
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPL 211
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 0.45
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 28 TTGIVLDSGDGVSHTVPIYEG 90
++GIVL+ G+ SH +P+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 0.45
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 20 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 112
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 22.2 bits (45), Expect = 9.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 20 PVVPPVSCWTPATVSPTPCPSTRDTHSPTP 109
PV+P + V TP P + SP P
Sbjct: 571 PVIPETQETSEQQVHKTPSPEKQKVLSPPP 600
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 0.60
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 2 CSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 103
C R TR + PPV+C TP P C + H P
Sbjct: 624 CGR-TR-LYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 1 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 126
++ LYA G G+V+D G + PI +G + A +L L
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPL 226
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 37 IVLDSGDGVSHTVPIYEGYALPHAILRLDL 126
+V+DSG +H +P+ + A+ R+D+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDV 188
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 13 YASGRTTGIVLDSGDGVSHTVPIYEGYAL 99
+ASG+ T ++D G S IY+G+ L
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 5 SRCTRPVVPPVSCWTPATVSPTPCPST 85
SR T+P+ S +P VSP PST
Sbjct: 264 SRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 11 CTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 124
C + PV + T S TP P+T + +PTP+ T
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 47 TPATVSPTPCPSTRDTHSPT 106
T AT + TP P+T T +PT
Sbjct: 935 TKATTTFTPTPTTTTTPTPT 954
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 14 TRPVVPPVSCWTPATVSPTPCPSTRDT 94
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 49 SGDGVSHTVPIYEGYALP 102
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 32 PVSCWTPATVSPTPCPSTRDTHSP 103
P S TP + T P+T DTH P
Sbjct: 280 PQSGSTPQMQNTTSQPTTHDTHPP 303
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 78 GHGVGDTVAGVQHDTGGTTGR 16
G G GDTV GG GR
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR 159
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 20 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 112
P VPP S T + PT ST SP P+
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 20 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 112
P VPP S T + PT ST SP P+
Sbjct: 249 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +2
Query: 20 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 112
P VPP S T + PT ST +P P+
Sbjct: 136 PTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 15 RVRSYHRYRAGLRRRCLPHRAHL 83
R RS HR+ G RR P+R HL
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHL 162
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 80 MGTVWETPSPESSTIPVVRP 21
M T W P ST+P V P
Sbjct: 461 MPTYWSFPQNYDSTVPAVYP 480
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 111 DGVGECVSLVDGHGVGDT 58
DG E + +V HG+GDT
Sbjct: 20 DGASEQLPVVIWHGLGDT 37
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 69 HRAHLRGIRTPPRHP 113
H A +RG+ PRHP
Sbjct: 204 HIATVRGLAVSPRHP 218
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 62 SPTPCPSTRDTHSPTPSCVWT 124
SP+P P++ D S T W+
Sbjct: 244 SPSPIPNSNDNDSQTRRSSWS 264
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 87 GIRTPPRHPAS 119
GI+ PP+HP S
Sbjct: 538 GIKNPPKHPLS 548
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 69 VGDTVAGVQHDTGGTTGRVQR 7
+GD + V + G TTGR +R
Sbjct: 295 IGDHLQSVGREVGVTTGRKRR 315
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 99 ECVSLVDGHGVGDTVAGVQHD 37
+C L+ G G G+ AG+ D
Sbjct: 110 DCAILIIGGGTGEFEAGISKD 130
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 20 PVVPPVSCWTPATVSP 67
PV+PPV + P + P
Sbjct: 235 PVLPPVEIYDPEDIKP 250
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 99 ECVSLVDGHGVGDTVAGVQHD 37
+C L+ G G G+ AG+ D
Sbjct: 110 DCAVLIIGGGTGEFEAGISKD 130
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 47 TPATVSPTPCPSTRDTHSPTP 109
TPA +P P P+ + H P P
Sbjct: 728 TPAPPTPAPTPAVKH-HPPPP 747
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 42 AGLRRRCLPHRAHLRGIRTP 101
AGL RRCL ++ G+ P
Sbjct: 295 AGLARRCLVQLSYAIGVAEP 314
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 65 PTPCPSTRDTHSPTP 109
P+ PST HSP P
Sbjct: 168 PSLLPSTHSPHSPAP 182
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 99 ECVSLVDGHGVGDTVAGVQHD 37
+C L+ G G G+ AG+ D
Sbjct: 110 DCAILIIGGGTGEFEAGISKD 130
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 60 CLPHRAHLRGIR 95
CL H+ HL+G R
Sbjct: 510 CLKHKFHLKGFR 521
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 50 PATVSPTPCPSTRDTHSPTP 109
PA + PTP P+ P P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAP 756
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,939
Number of Sequences: 5004
Number of extensions: 8811
Number of successful extensions: 64
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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