Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21d04
         (129 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   1.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   4.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   4.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   5.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   7.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          18   9.6  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -1

Query: 87  LVDGH--GVGDTVAGVQ 43
           L++GH  G+GDT+A  Q
Sbjct: 142 LLEGHSIGIGDTIADPQ 158



 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 45  GLRRRCLPH 71
           G R+R LPH
Sbjct: 262 GFRKRTLPH 270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 9   AVRVRSYHRYRAGLRRRCLPHRAHLRGIRTPPRHP 113
           ++  +++HR        C P   +L  I + P HP
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHP 96


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 99  PPRHPASG 122
           PP HP SG
Sbjct: 98  PPNHPLSG 105


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 99  PPRHPASG 122
           PP HP SG
Sbjct: 98  PPNHPLSG 105


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 56  TVSPTPCPSTRDTHSPTPS 112
           T  P  CP  R   SP+ S
Sbjct: 562 TPQPPQCPRFRKLDSPSDS 580


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 99  ECVSLVDGHGVGDTVAGV 46
           +C  L+   G+G+  AG+
Sbjct: 110 DCAVLIVAAGIGEFEAGI 127


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 24  SYHRYRAGLRRRC 62
           ++ RYR  L++RC
Sbjct: 339 NHPRYRQELQKRC 351


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +2

Query: 20  PVVPPVSCWTPATVSPTPCPSTRD 91
           P  PP+ C      S T C   +D
Sbjct: 428 PDDPPIGCECKTCNSKTKCCFAQD 451


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 24  SYHRYRAGLRRRC 62
           ++ RYR  L++RC
Sbjct: 339 NHPRYRQELQKRC 351


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 28  TTGIVLDSGDGVSHTVPIY 84
           T GI   SGD +  T PIY
Sbjct: 195 TEGIA-KSGDVLVETEPIY 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,374
Number of Sequences: 438
Number of extensions: 798
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)