Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt21d02
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 184 8e-48
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 117 2e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 106 3e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 83 5e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 4e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 76 6e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 1e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 70 4e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 70 4e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 2e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 4e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 61 2e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 61 2e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 59 7e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 58 9e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 6e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 50 3e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.004
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.21
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.48
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.9
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.9
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.8
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 7.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 184 bits (449), Expect = 8e-48
Identities = 85/146 (58%), Positives = 106/146 (72%)
Frame = +1
Query: 250 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 429
N+ + DW + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 430 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 609
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 610 PPIRRGDGPIALVLAPTRELAQQIQQ 687
P + GDGPI LVLAPTRELA QIQQ
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQ 213
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 117 bits (281), Expect = 2e-27
Identities = 53/140 (37%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Frame = +1
Query: 265 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPD 441
D ++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 442 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 621
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 622 RGDGPIALVLAPTRELAQQI 681
G+GPIA+++ PTRELA QI
Sbjct: 488 TGEGPIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 106 bits (254), Expect = 3e-24
Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Frame = +1
Query: 361 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 540
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 541 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 684
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 82.6 bits (195), Expect = 5e-17
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = +1
Query: 406 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 585
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG+A+TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 586 AIVHINNQPPIRRGDGPIALVLAPTRELAQQ 678
A+ ++N + P LV++PTRELA Q
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 4e-15
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +1
Query: 388 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 567
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 568 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 690
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 75.8 bits (178), Expect = 6e-15
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 598 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 687
+ NN P A+VLAPTRELA QI +
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISE 132
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.5 bits (175), Expect = 1e-14
Identities = 39/91 (42%), Positives = 54/91 (59%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 598 INNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
+ + G G AL++APTRELA QI V
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNV 91
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 598 INNQPPIRRGDGPIALVLAPTRELAQQIQQVA 693
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 69.7 bits (163), Expect = 4e-13
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Frame = +1
Query: 346 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 525
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 526 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 693
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVA 181
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 69.7 bits (163), Expect = 4e-13
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Frame = +1
Query: 376 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 555
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 556 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 687
SGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 598 INNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
+ + AL+L+P RELA Q +V
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKV 158
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/91 (34%), Positives = 55/91 (60%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 598 INNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
++ + + L+L PTRELA Q QV
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQV 131
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/109 (34%), Positives = 58/109 (53%)
Frame = +1
Query: 352 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 531
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 532 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 678
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +1
Query: 409 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 582
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 583 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
+ ++ P P A+ LAP+RELA+QI V
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDV 203
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.9 bits (141), Expect = 2e-10
Identities = 38/113 (33%), Positives = 63/113 (55%)
Frame = +1
Query: 352 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 531
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 532 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNV 108
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.8 bits (136), Expect = 7e-10
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Frame = +1
Query: 271 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 444
D++ L N F + P P++ ++ +++ + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEG 55
Query: 445 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 621
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 622 RGDGPIALVLAPTRELAQQIQQVA 693
G A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 58.4 bits (135), Expect = 9e-10
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +1
Query: 418 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 597
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 598 INNQPPIRRGDGPIALVLAPTRELAQQI-QQVAA 696
+ P G AL+L PTRELA QI +Q AA
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAA 97
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 58.0 bits (134), Expect = 1e-09
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 469 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 642
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 643 LVLAPTRELAQQIQQ 687
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 55.6 bits (128), Expect = 6e-09
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +1
Query: 466 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 633
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 634 PIALVLAPTRELAQQIQQVA 693
A+++APTREL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/94 (31%), Positives = 55/94 (58%)
Frame = +1
Query: 409 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 588
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 589 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 690
+ I+ +++ AL+LAPTRELAQQIQ+V
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.0 bits (114), Expect = 3e-07
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 385 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 561
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 562 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 693
KTLA++L A + P +++L+PTRELA QI + A
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 529 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 681
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 529 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 681
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 508 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 681
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 517 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 675
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.5 bits (63), Expect = 0.48
Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 4/140 (2%)
Frame = -2
Query: 516 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFDFIW* 337
+Y L +G H L ++ + F K ++ + + SY++I+ + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 336 SFENCRMWIIKVFVERLERNRIPIWAT----HVLTSREFFFPTKSSRSSKSIATVAKSRR 169
+ F L+ NR+ I A+ H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 168 IIAEFVASSKFGTTVSTAII 109
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 466 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 606
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 376 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 555
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 556 SGKTLAYILPAIVHINNQPPIRRGD 630
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -2
Query: 258 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 112
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 111 IPVT 100
PV+
Sbjct: 198 APVS 201
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 273 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 130
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 205 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 47
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 114 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 34
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.8
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = -2
Query: 312 IIKVFVERLERNRIPIWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKFG 133
++ F E P + V S F ++ S +S AT+AK + +S KF
Sbjct: 129 LLSKFKENSIETISPFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFL 187
Query: 132 TTVSTAIIPV--TRHDYFSDLVEDVYLNYGFFLTQG 31
+ V T H+Y+++LV+ ++ F +QG
Sbjct: 188 FEAKERLTSVVETEHEYYTELVKVKEASWPLFNSQG 223
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 271 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 414
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 469 PLSLHLVAHNQENL--LLQSIE 410
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,390
Number of Sequences: 5004
Number of extensions: 59156
Number of successful extensions: 217
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -