Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21c17
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    35   0.013
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    31   0.16 
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   2.6  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    26   4.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   5.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.9  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 549 ERVFHH-YYFRRCV*TQNILYFFQFVQCEINLIFHIFL 439
           E+  HH  +   CV   N  YFF F+ C I L+FH  L
Sbjct: 182 EKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHSIL 219


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 141 AILLEDQGSI--SHLLSKGANPNKTASRGKTCLGEAANTGNVD-VMKLLITASKTPQSKN 311
           + + +  GS+  SH+ +KG +P+   S     +G+   TGNV  V  L+  A K P  K+
Sbjct: 212 SFVADPPGSVLYSHIKTKGKHPDNKGSSFTEGIGQGRITGNVQPVYDLIDDAMKIPDEKS 271


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 195 NPNKTASRGKTCL-GEAANTGNVDVMKLLITASKTPQSKNNQAPSRKRTLKCHKRK 359
           +P KT S     + G+   +GN      L+      ++K      RKR +KC +RK
Sbjct: 5   SPPKTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTKTGCLTCRKRRIKCDERK 60


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 325 EGAWLFLLCGVLLAVMRSFITSTFPVLAA 239
           EGA L+ +CG+   V+ SF+ +   V+ A
Sbjct: 81  EGAILYSICGMTAEVVSSFVWTPLEVIKA 109


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 72  EIKARFRVPYNKMENSLEEALFQAILLEDQGSISHLLSK-GANPNKTASRGKTCLGEAAN 248
           +IK    + +NK ++    ALF +I   +   + H+LS    + N       T L  AA 
Sbjct: 39  DIKQVDNLLHNKSKDECTHALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAM 98

Query: 249 TGNVDVMKLLI 281
            G  D+++ L+
Sbjct: 99  AGRQDIVEALL 109


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = +3

Query: 72   EIKARFRVPYNKMENSLEEALF-------QAILLEDQGSISHLLSKG 191
            E+KA F VP+N  +N      F       Q +   D  + SH L KG
Sbjct: 895  ELKADFAVPHNMYDNGFNGLFFMVFDSQKQRVHYGDMYTSSHTLEKG 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,251
Number of Sequences: 5004
Number of extensions: 50778
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)