Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21c17
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.90 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   1.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 320 CLVILTLWCFAGCYEKFHYVNISCVS 243
           C+V+L ++C   CY + H  +I  V+
Sbjct: 205 CIVMLGIYCRLYCYAQKHVKSIRAVT 230


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 538 SSLLLPSLCINTKYPLFFSICP 473
           S L LP+  IN+K PL    CP
Sbjct: 44  SHLCLPAPRINSKSPLLSCACP 65


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 538 SSLLLPSLCINTKYPLFFSICP 473
           S L LP+  IN+K PL    CP
Sbjct: 44  SHLCLPAPRINSKSPLLSCACP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,978
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)