Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21c05
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   145   4e-36
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   0.98 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.3  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.0  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   4.0  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   5.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   6.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.1  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  145 bits (352), Expect = 4e-36
 Identities = 74/136 (54%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
 Frame = +2

Query: 233 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 409
           MS+L+QLK   TVV +DTGDFE++ +YKP DATTNPSLIL+A+   QY  ++D A+ Y K
Sbjct: 1   MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60

Query: 410 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 589
             G SI  Q+    D L + FG +IL I+PGRVS EVDAR SFD   +I KA   I L+ 
Sbjct: 61  AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120

Query: 590 EHGIKKERILIKLAST 637
             GI +ER+LIK+AST
Sbjct: 121 AEGIGRERVLIKIAST 136


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 600 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 421
           +P S NK+ +   F  +     +N    S+ ++   I N S P   +S + +SAT  S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207

Query: 420 LPL 412
           +P+
Sbjct: 208 IPI 210


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 609 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 457
           S LIP   +K    +A    +SL ++NLA+ +  T    IF+++ PK   S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 194 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 370
           VS S  PD TKR   S L ++K    +       ++ K+ KP+   T+  + L+ A M  
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199

Query: 371 YQHI 382
           YQ +
Sbjct: 200 YQDV 203


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 266 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 445
           T +AD  +     + +  D  T   L+L + G+E Y    D A      N  S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330

Query: 446 TLDMLS 463
            L++ S
Sbjct: 331 FLNLPS 336


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 481 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 392
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 495 IIFNISHPKSTLSISKVSATCSSMELPLSF 406
           II N+   KS L+  KV A CS +   LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +2

Query: 242  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK---- 409
            LDQLK H T+V   GD          + + +P     A   E +   L KA++ G     
Sbjct: 1979 LDQLKIHETLVHSLGDIHEKARKLLAEFSASP-----AGRFEWFDGYLLKAVEEGHWFVL 2033

Query: 410  DNGSSIEEQVAETLDML 460
            DN +     V + L+ L
Sbjct: 2034 DNANLCSPAVLDRLNSL 2050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,969
Number of Sequences: 5004
Number of extensions: 52690
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)