Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21c05
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   163   1e-40
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   6.4  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  163 bits (395), Expect = 1e-40
 Identities = 81/135 (60%), Positives = 103/135 (76%)
 Frame = +2

Query: 233 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 412
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 413 NGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 592
           + S  +E +   +D L V+FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + +
Sbjct: 61  HASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEK 120

Query: 593 HGIKKERILIKLAST 637
            GI K+RILIKLAST
Sbjct: 121 EGISKDRILIKLAST 135


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +2

Query: 293 EAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDN---GSSIEEQVAETLDMLS 463
           E  K    T   T P++   A G+      LD A +Y  +    G+ I      +  +  
Sbjct: 255 EGFKVAMKTFDKTRPTVAALATGVAY--RCLDVATQYSLERKAFGTQIANHQGVSFLLAE 312

Query: 464 VLFGCEILKIIPGRVSVEVDARLSFDKDASIAK 562
           +   CE+ +++  +   EVDA       ASIAK
Sbjct: 313 MAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
           protein 10 protein.
          Length = 2302

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 182 NISLVSMSGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTD--ATTNPSLILSA 355
           NIS+  +   P TKRT+++  D+ K   T V  T       E    D  + T   L L  
Sbjct: 196 NISVDVIKLAPTTKRTRVTVPDRPKLMETTVPVTSSSSTSSEMIEVDGESETQEDLTLGG 255

Query: 356 AGME 367
            G E
Sbjct: 256 GGAE 259


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 606 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 481
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


>Z81147-12|CAB03539.2|  494|Caenorhabditis elegans Hypothetical
           protein T09E11.6 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 469 KHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFH 362
           +H Q + SF+HL FN   +I S  NS ++    L H
Sbjct: 413 EHFQAVASFTHLMFN--KVIPSFDNSIVECTAELLH 446


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 314 PTDATTNPSLILSAAG-MEQYQHILDKAIKYGKDNGSSIEEQVA-ETLDMLSVLFGCEIL 487
           P D     S ++   G M  Y+H L     YG  N S I  +VA +   M+      +IL
Sbjct: 401 PLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKAQKMMKTTARYQIL 460

Query: 488 KIIPGRVSVEVDARLSFDKDAS 553
            II   +  ++ A ++   +AS
Sbjct: 461 LIITDGIISDMYATINTVINAS 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,156
Number of Sequences: 27780
Number of extensions: 279389
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)