Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt21b23
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.15 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    30   0.25 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.34 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.1  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    26   4.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   5.5  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   5.5  
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   7.2  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.2  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   9.5  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -1

Query: 533 ALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPAHVAEVVP 360
           ALV+ P RELA  H + +H E  + + + R+  +  G+     +RLL    HV    P
Sbjct: 195 ALVVAPTRELA--HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATP 250


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 18/63 (28%), Positives = 20/63 (31%)
 Frame = +2

Query: 194 PHPGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRRAEPPQ 373
           P P  H PG H P P    P   E  +       H   G H   P +          PP 
Sbjct: 209 PPPMHHKPGEHMPPP----PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM 264

Query: 374 QHE 382
            HE
Sbjct: 265 HHE 267



 Score = 30.3 bits (65), Expect = 0.25
 Identities = 18/63 (28%), Positives = 20/63 (31%)
 Frame = +2

Query: 194 PHPGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRRAEPPQ 373
           P P  H PG H P P    P   E  +       H   G H   P +          PP 
Sbjct: 261 PPPMHHEPGEHMPPP----PMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM 316

Query: 374 QHE 382
            HE
Sbjct: 317 HHE 319



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/61 (26%), Positives = 19/61 (31%)
 Frame = +2

Query: 200 PGRHVPGAHAPHPGQSAPRRTEVRDQPAVRTQHGPAGRHRAAPQLPLRGDVRRAEPPQQH 379
           P  H PG H P P    P   +  +       H   G H   P +          PP  H
Sbjct: 198 PAHHEPGEHMPPP----PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 253

Query: 380 E 382
           E
Sbjct: 254 E 254


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -2

Query: 592 APSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGSHSTSASKVSPLACSG 413
           +PS+    T+TSPS+         S   +S   +  S++  +  S S+S+S  S  + S 
Sbjct: 143 SPSSSSTTTTTSPSSSSSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197

Query: 412 IPPAVSSAPQLMLLRWFRTTHISTKRKLRCSAMSSRGS 299
              + SS+  + +     ++H S+      S+ SSR S
Sbjct: 198 SSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -2

Query: 631 GSDMYMLAG--GGGCAPSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARGS 458
           GSD  + A    GG   S   + +STS ST         S   +S   TP S+++ +  S
Sbjct: 119 GSDSTLAASTISGGIYSST--SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSIS 176

Query: 457 HSTSASKVSPLACSGIPPAVSSA 389
            S S+S  S  A S    ++SSA
Sbjct: 177 SSASSSVSSSSASSS--GSISSA 197


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -1

Query: 560 VPVHREVRDALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVGVQRHPARRLLGAPA 381
           +P  +E ++A + Q  ++  +    QR ++       Q++    +G+  HPA R    PA
Sbjct: 112 IPFQQE-KEAAMQQQQQQQQQQQLYQRQMQSREALLSQQIPPNQIGINAHPAVRQTPQPA 170


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 432 ETFEALVLCEPRALKVALNGVHFCEFPHRLQYQRISHLTVD 554
           ETF++ V+C+P AL V  +  H     HRL  +  +H +++
Sbjct: 72  ETFDSKVVCDPVALTVLADASH-----HRLFRRLKTHWSIE 107


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 640 YTGGSDMYMLAGGGGCAPSNPMNCTSTSPSTVRCEMRWYCSRCGNSQKCTPFSATLRARG 461
           YTG S    L    G + S  ++   +S   +    RW  S+  +SQ  +PF  T  + G
Sbjct: 76  YTGDSTTD-LDSKSGHSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSSPFLPTSSSNG 134

Query: 460 SHSTSAS 440
            H   AS
Sbjct: 135 -HGDDAS 140


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 554 VHREVR-DALVLQPVRELAEVHAVQRHLEGARLAQHQRLEGLPVG 423
           VHR+++ + L+ QP+  L   +     LE  +L +   LEG+  G
Sbjct: 185 VHRDIKPENLLFQPIEYLPSQNYTPPSLEPNKLDEGMFLEGIGAG 229


>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 79  KYPGLRVMTNVNDEREKNTFC 17
           K PG R +  V D+ E +TFC
Sbjct: 290 KVPGYRELDGVADDSEVSTFC 310


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 574 NCTSTSPSTVRCEMRWYCSRCGNSQK-CT 491
           +C       V+C+ ++ CSRC  S++ CT
Sbjct: 17  SCLRCRRRKVKCDRQYPCSRCKESEESCT 45


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 499 KCTPFSATLRARGSHSTSASKVS 431
           K  PF+ATLR +  H +++ K S
Sbjct: 254 KHLPFTATLRKKSPHDSTSRKAS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,472
Number of Sequences: 5004
Number of extensions: 51235
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)